FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5173, 169 aa
  1>>>pF1KE5173 169 - 169 aa - 169 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7646+/-0.000755; mu= 14.9180+/- 0.045
 mean_var=57.3619+/-11.460, 0's: 0 Z-trim(107.4): 14  B-trim: 14 in 1/50
 Lambda= 0.169341
 statistics sampled from 9518 (9526) to 9518 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.293), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS1230.1 SDHC gene_id:6391|Hs108|chr1            ( 169) 1140 286.3 6.1e-78
CCDS44263.1 SDHC gene_id:6391|Hs108|chr1           ( 135)  748 190.5 3.4e-49
CCDS41432.1 SDHC gene_id:6391|Hs108|chr1           ( 116)  731 186.3 5.4e-48
CCDS41431.1 SDHC gene_id:6391|Hs108|chr1           ( 150)  559 144.3   3e-35


>>CCDS1230.1 SDHC gene_id:6391|Hs108|chr1                 (169 aa)
 initn: 1140 init1: 1140 opt: 1140  Z-score: 1512.8  bits: 286.3 E(32554): 6.1e-78
Smith-Waterman score: 1140; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
               70        80        90       100       110       120

              130       140       150       160         
pF1KE5 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
              130       140       150       160         

>>CCDS44263.1 SDHC gene_id:6391|Hs108|chr1                (135 aa)
 initn: 748 init1: 748 opt: 748  Z-score: 996.6  bits: 190.5 E(32554): 3.4e-49
Smith-Waterman score: 833; 79.9% identity (79.9% similar) in 169 aa overlap (1-169:1-135)

               10        20        30        40        50        60
pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
       ::::::::::::::::::::::::::                                  
CCDS44 MAALLLRHVGRHCLRAHFSPQLCIRN----------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
         30        40        50        60        70        80      

              130       140       150       160         
pF1KE5 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
         90       100       110       120       130     

>>CCDS41432.1 SDHC gene_id:6391|Hs108|chr1                (116 aa)
 initn: 731 init1: 731 opt: 731  Z-score: 975.2  bits: 186.3 E(32554): 5.4e-48
Smith-Waterman score: 731; 98.2% identity (99.1% similar) in 112 aa overlap (58-169:5-116)

        30        40        50        60        70        80       
pF1KE5 VPLGTTAKEEMERFWNKNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGM
                                     . ::::::::::::::::::::::::::::
CCDS41                           MAALLLSWSLPMAMSICHRGTGIALSAGVSLFGM
                                         10        20        30    

        90       100       110       120       130       140       
pF1KE5 SALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQ
           40        50        60        70        80        90    

       150       160         
pF1KE5 LYQSGVVVLVLTVLSSMGLAAM
       ::::::::::::::::::::::
CCDS41 LYQSGVVVLVLTVLSSMGLAAM
          100       110      

>>CCDS41431.1 SDHC gene_id:6391|Hs108|chr1                (150 aa)
 initn: 559 init1: 559 opt: 559  Z-score: 746.4  bits: 144.3 E(32554): 3e-35
Smith-Waterman score: 559; 98.8% identity (98.8% similar) in 82 aa overlap (1-82:1-82)

               10        20        30        40        50        60
pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
       :::::::::::::::::::: :                                      
CCDS41 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS
               70        80        90       100       110       120




169 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:17:05 2016 done: Mon Nov  7 22:17:06 2016
 Total Scan time:  1.880 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]