FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5171, 161 aa
  1>>>pF1KE5171 161 - 161 aa - 161 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9126+/-0.000259; mu= 10.0933+/- 0.016
 mean_var=75.6139+/-15.508, 0's: 0 Z-trim(121.0): 1  B-trim: 2194 in 1/51
 Lambda= 0.147494
 statistics sampled from 37019 (37020) to 37019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.434), width:  16
 Scan time:  5.050

The best scores are:                                      opt bits E(85289)
NP_060377 (OMIM: 613510) ragulator complex protein ( 161) 1046 230.7 7.7e-61


>>NP_060377 (OMIM: 613510) ragulator complex protein LAM  (161 aa)
 initn: 1046 init1: 1046 opt: 1046  Z-score: 1213.3  bits: 230.7 E(85289): 7.7e-61
Smith-Waterman score: 1046; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA
               70        80        90       100       110       120

              130       140       150       160 
pF1KE5 SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP
       :::::::::::::::::::::::::::::::::::::::::
NP_060 SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP
              130       140       150       160 




161 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:15:54 2016 done: Mon Nov  7 22:15:54 2016
 Total Scan time:  5.050 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]