FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5168, 153 aa
  1>>>pF1KE5168 153 - 153 aa - 153 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9381+/-0.000294; mu= 14.1630+/- 0.018
 mean_var=60.0748+/-11.748, 0's: 0 Z-trim(117.4): 41  B-trim: 0 in 0/54
 Lambda= 0.165473
 statistics sampled from 29429 (29461) to 29429 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.345), width:  16
 Scan time:  5.080

The best scores are:                                      opt bits E(85289)
NP_060308 (OMIM: 224230,606470,613987) H/ACA ribon ( 153) 1028 253.0 1.4e-67
NP_001030005 (OMIM: 224230,606470,613987) H/ACA ri (  90)  506 128.2   3e-30
NP_004999 (OMIM: 601304) NHP2-like protein 1 [Homo ( 128)  312 82.0 3.4e-16
NP_001003796 (OMIM: 601304) NHP2-like protein 1 [H ( 128)  312 82.0 3.4e-16
NP_000963 (OMIM: 185640) 60S ribosomal protein L7a ( 266)  145 42.3 0.00063


>>NP_060308 (OMIM: 224230,606470,613987) H/ACA ribonucle  (153 aa)
 initn: 1028 init1: 1028 opt: 1028  Z-score: 1334.3  bits: 253.0 E(85289): 1.4e-67
Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE5 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS
               70        80        90       100       110       120

              130       140       150   
pF1KE5 KRPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL
       :::::::::::::::::::::::::::::::::
NP_060 KRPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL
              130       140       150   

>>NP_001030005 (OMIM: 224230,606470,613987) H/ACA ribonu  (90 aa)
 initn: 523 init1: 506 opt: 506  Z-score: 664.2  bits: 128.2 E(85289): 3e-30
Smith-Waterman score: 506; 97.5% identity (97.5% similar) in 80 aa overlap (1-80:1-80)

               10        20        30        40        50        60
pF1KE5 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS
       :::::::::::::::::  :                                        
NP_001 RRGVKEVQKFVNKGEKGTWVQPQAPSAPPV                              
               70        80        90                              

>>NP_004999 (OMIM: 601304) NHP2-like protein 1 [Homo sap  (128 aa)
 initn: 297 init1: 297 opt: 312  Z-score: 411.6  bits: 82.0 E(85289): 3.4e-16
Smith-Waterman score: 312; 36.7% identity (70.0% similar) in 120 aa overlap (32-149:7-126)

              10        20        30        40        50        60 
pF1KE5 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR
                                     :: : :::. .::.::   .... . ::.:
NP_004                         MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR
                                       10        20        30      

              70        80        90       100       110       120 
pF1KE5 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK
       .:..:. : .:.: . ..:.:.:. :.:.  :::..:::.:.:::.. ::  :: : : .
NP_004 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS
         40        50        60        70        80        90      

               130       140       150   
pF1KE5 RPT--CVIMVKPHEEYQEAYDECLEEVQSLPLPL
       ::.  : . .:   . ..  .   . .. :    
NP_004 RPVIACSVTIKEGSQLKQQIQSIQQSIERLLV  
        100       110       120          

>>NP_001003796 (OMIM: 601304) NHP2-like protein 1 [Homo   (128 aa)
 initn: 297 init1: 297 opt: 312  Z-score: 411.6  bits: 82.0 E(85289): 3.4e-16
Smith-Waterman score: 312; 36.7% identity (70.0% similar) in 120 aa overlap (32-149:7-126)

              10        20        30        40        50        60 
pF1KE5 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR
                                     :: : :::. .::.::   .... . ::.:
NP_001                         MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR
                                       10        20        30      

              70        80        90       100       110       120 
pF1KE5 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK
       .:..:. : .:.: . ..:.:.:. :.:.  :::..:::.:.:::.. ::  :: : : .
NP_001 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS
         40        50        60        70        80        90      

               130       140       150   
pF1KE5 RPT--CVIMVKPHEEYQEAYDECLEEVQSLPLPL
       ::.  : . .:   . ..  .   . .. :    
NP_001 RPVIACSVTIKEGSQLKQQIQSIQQSIERLLV  
        100       110       120          

>>NP_000963 (OMIM: 185640) 60S ribosomal protein L7a [Ho  (266 aa)
 initn: 143 init1: 126 opt: 145  Z-score: 191.5  bits: 42.3 E(85289): 0.00063
Smith-Waterman score: 145; 29.1% identity (57.3% similar) in 117 aa overlap (36-148:108-224)

          10        20        30        40        50            60 
pF1KE5 ADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKA-VKQKQ---IR
                                     :   .: :.:   :   :. :  :.   .:
NP_000 PAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLR
        80        90       100       110       120       130       

              70        80        90       100       110       120 
pF1KE5 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK
        ::. :  .:.. .  ..:.: :. :::.   ::..:.  ..::  : .:. ::  .  :
NP_000 AGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRK
       140       150       160       170       180       190       

             130       140       150                               
pF1KE5 RPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL                            
         : : ... . : . :  . .: ...                                 
NP_000 TCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAK
       200       210       220       230       240       250       




153 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:14:20 2016 done: Mon Nov  7 22:14:20 2016
 Total Scan time:  5.080 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]