FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5168, 153 aa
  1>>>pF1KE5168 153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8495+/-0.000644; mu= 14.6051+/- 0.039
 mean_var=59.0489+/-11.589, 0's: 0 Z-trim(110.6): 16  B-trim: 246 in 1/50
 Lambda= 0.166905
 statistics sampled from 11727 (11740) to 11727 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.361), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS4432.1 NHP2 gene_id:55651|Hs108|chr5           ( 153) 1028 255.0 1.4e-68
CCDS34308.1 NHP2 gene_id:55651|Hs108|chr5          (  90)  506 129.1   6e-31
CCDS33653.1 SNU13 gene_id:4809|Hs108|chr22         ( 128)  312 82.5 9.3e-17
CCDS14022.1 SNU13 gene_id:4809|Hs108|chr22         ( 128)  312 82.5 9.3e-17


>>CCDS4432.1 NHP2 gene_id:55651|Hs108|chr5                (153 aa)
 initn: 1028 init1: 1028 opt: 1028  Z-score: 1345.0  bits: 255.0 E(32554): 1.4e-68
Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE5 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS
               70        80        90       100       110       120

              130       140       150   
pF1KE5 KRPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL
       :::::::::::::::::::::::::::::::::
CCDS44 KRPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL
              130       140       150   

>>CCDS34308.1 NHP2 gene_id:55651|Hs108|chr5               (90 aa)
 initn: 523 init1: 506 opt: 506  Z-score: 669.0  bits: 129.1 E(32554): 6e-31
Smith-Waterman score: 506; 97.5% identity (97.5% similar) in 80 aa overlap (1-80:1-80)

               10        20        30        40        50        60
pF1KE5 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MTKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGS
       :::::::::::::::::  :                                        
CCDS34 RRGVKEVQKFVNKGEKGTWVQPQAPSAPPV                              
               70        80        90                              

>>CCDS33653.1 SNU13 gene_id:4809|Hs108|chr22              (128 aa)
 initn: 297 init1: 297 opt: 312  Z-score: 414.3  bits: 82.5 E(32554): 9.3e-17
Smith-Waterman score: 312; 36.7% identity (70.0% similar) in 120 aa overlap (32-149:7-126)

              10        20        30        40        50        60 
pF1KE5 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR
                                     :: : :::. .::.::   .... . ::.:
CCDS33                         MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR
                                       10        20        30      

              70        80        90       100       110       120 
pF1KE5 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK
       .:..:. : .:.: . ..:.:.:. :.:.  :::..:::.:.:::.. ::  :: : : .
CCDS33 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS
         40        50        60        70        80        90      

               130       140       150   
pF1KE5 RPT--CVIMVKPHEEYQEAYDECLEEVQSLPLPL
       ::.  : . .:   . ..  .   . .. :    
CCDS33 RPVIACSVTIKEGSQLKQQIQSIQQSIERLLV  
        100       110       120          

>>CCDS14022.1 SNU13 gene_id:4809|Hs108|chr22              (128 aa)
 initn: 297 init1: 297 opt: 312  Z-score: 414.3  bits: 82.5 E(32554): 9.3e-17
Smith-Waterman score: 312; 36.7% identity (70.0% similar) in 120 aa overlap (32-149:7-126)

              10        20        30        40        50        60 
pF1KE5 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR
                                     :: : :::. .::.::   .... . ::.:
CCDS14                         MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR
                                       10        20        30      

              70        80        90       100       110       120 
pF1KE5 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK
       .:..:. : .:.: . ..:.:.:. :.:.  :::..:::.:.:::.. ::  :: : : .
CCDS14 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS
         40        50        60        70        80        90      

               130       140       150   
pF1KE5 RPT--CVIMVKPHEEYQEAYDECLEEVQSLPLPL
       ::.  : . .:   . ..  .   . .. :    
CCDS14 RPVIACSVTIKEGSQLKQQIQSIQQSIERLLV  
        100       110       120          




153 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:14:19 2016 done: Mon Nov  7 22:14:19 2016
 Total Scan time:  1.850 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]