Result of FASTA (ccds) for
pFN21AE5166
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5166, 157 aa
1>>>pF1KE5166 157 - 157 aa - 157 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6301+/-0.000746; mu= 11.8701+/- 0.045
mean_var=87.8958+/-17.278, 0's: 0 Z-trim(109.7): 19 B-trim: 5 in 1/53
Lambda= 0.136801
statistics sampled from 11095 (11107) to 11095 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.341), width: 16
Scan time: 1.600
The best scores are: opt bits E(32554)
CCDS63154.1 COPS7B gene_id:64708|Hs108|chr2 ( 157) 1028 211.9 1.3e-55
CCDS63152.1 COPS7B gene_id:64708|Hs108|chr2 ( 230) 1028 212.0 1.8e-55
CCDS2488.1 COPS7B gene_id:64708|Hs108|chr2 ( 264) 1028 212.1 1.9e-55
CCDS74668.1 COPS7B gene_id:64708|Hs108|chr2 ( 209) 1016 209.6 8.4e-55
CCDS77539.1 COPS7B gene_id:64708|Hs108|chr2 ( 278) 705 148.3 3.1e-36
CCDS63153.1 COPS7B gene_id:64708|Hs108|chr2 ( 273) 698 147.0 8.1e-36
CCDS8558.1 COPS7A gene_id:50813|Hs108|chr12 ( 275) 605 128.6 2.7e-30
>>CCDS63154.1 COPS7B gene_id:64708|Hs108|chr2 (157 aa)
initn: 1028 init1: 1028 opt: 1028 Z-score: 1111.9 bits: 211.9 E(32554): 1.3e-55
Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1-157)
10 20 30 40 50 60
pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MKCIPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 NNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTLKATASSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTLKATASSS
70 80 90 100 110 120
130 140 150
pF1KE5 AQEMEQQLAERECPPHAEQRQPTKKMSKVKGLVSSRH
:::::::::::::::::::::::::::::::::::::
CCDS63 AQEMEQQLAERECPPHAEQRQPTKKMSKVKGLVSSRH
130 140 150
>>CCDS63152.1 COPS7B gene_id:64708|Hs108|chr2 (230 aa)
initn: 1028 init1: 1028 opt: 1028 Z-score: 1109.6 bits: 212.0 E(32554): 1.8e-55
Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:74-230)
10 20 30
pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVY
::::::::::::::::::::::::::::::
CCDS63 YIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVY
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE5 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE5 YKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVK
170 180 190 200 210 220
pF1KE5 GLVSSRH
:::::::
CCDS63 GLVSSRH
230
>>CCDS2488.1 COPS7B gene_id:64708|Hs108|chr2 (264 aa)
initn: 1028 init1: 1028 opt: 1028 Z-score: 1108.7 bits: 212.1 E(32554): 1.9e-55
Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:108-264)
10 20 30
pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVY
::::::::::::::::::::::::::::::
CCDS24 YIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVY
80 90 100 110 120 130
40 50 60 70 80 90
pF1KE5 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ
140 150 160 170 180 190
100 110 120 130 140 150
pF1KE5 YKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 YKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVK
200 210 220 230 240 250
pF1KE5 GLVSSRH
:::::::
CCDS24 GLVSSRH
260
>>CCDS74668.1 COPS7B gene_id:64708|Hs108|chr2 (209 aa)
initn: 1016 init1: 1016 opt: 1016 Z-score: 1097.3 bits: 209.6 E(32554): 8.4e-55
Smith-Waterman score: 1016; 99.4% identity (100.0% similar) in 156 aa overlap (2-157:54-209)
10 20 30
pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVYT
.:::::::::::::::::::::::::::::
CCDS74 GSALTALISQVLEAPGVYVFGELLELANVQECIPYSVLLKDLEMRNLRELEDLIIEAVYT
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE5 DIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 DIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQY
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE5 KENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVKG
150 160 170 180 190 200
pF1KE5 LVSSRH
::::::
CCDS74 LVSSRH
>>CCDS77539.1 COPS7B gene_id:64708|Hs108|chr2 (278 aa)
initn: 736 init1: 705 opt: 705 Z-score: 763.9 bits: 148.3 E(32554): 3.1e-36
Smith-Waterman score: 705; 94.6% identity (99.1% similar) in 111 aa overlap (1-111:108-218)
10 20 30
pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVY
::::::::::::::::::::::::::::::
CCDS77 YIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVY
80 90 100 110 120 130
40 50 60 70 80 90
pF1KE5 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ
140 150 160 170 180 190
100 110 120 130 140 150
pF1KE5 YKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVK
:::::::::::::::.. ...
CCDS77 YKENHNRTQQQVEAEIACFQREKRDVPLLNLITTAFFWLPTSRRHSKPPHPPRLRRWSSS
200 210 220 230 240 250
>>CCDS63153.1 COPS7B gene_id:64708|Hs108|chr2 (273 aa)
initn: 714 init1: 698 opt: 698 Z-score: 756.5 bits: 147.0 E(32554): 8.1e-36
Smith-Waterman score: 698; 100.0% identity (100.0% similar) in 105 aa overlap (1-105:108-212)
10 20 30
pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVY
::::::::::::::::::::::::::::::
CCDS63 YIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVY
80 90 100 110 120 130
40 50 60 70 80 90
pF1KE5 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ
140 150 160 170 180 190
100 110 120 130 140 150
pF1KE5 YKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVK
:::::::::::::::
CCDS63 YKENHNRTQQQVEAEREKRDVPLLNLITTAFFWLPTSRRHSKPPHPPRLRRWSSSWLNGS
200 210 220 230 240 250
>>CCDS8558.1 COPS7A gene_id:50813|Hs108|chr12 (275 aa)
initn: 627 init1: 516 opt: 605 Z-score: 657.3 bits: 128.6 E(32554): 2.7e-30
Smith-Waterman score: 605; 58.1% identity (85.6% similar) in 160 aa overlap (1-155:108-267)
10 20 30
pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVY
.:::::.:::. : .::.:.::::.:::::
CCDS85 YLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVY
80 90 100 110 120 130
40 50 60 70 80 90
pF1KE5 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ
.:...:.:::::: ::::. :::::...:.. :..::.::: :::.:: :::.:: ::::
CCDS85 ADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQ
140 150 160 170 180 190
100 110 120 130 140
pF1KE5 YKENHNRTQQQVEAEVTNIKKTLKAT----ASSSAQEMEQQLAE-RECPPHAEQRQPTKK
.::.. .::.:.::.:.:::.:.: :....:. ::.:.: :: : ..::::.::
CCDS85 HKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLTELREPAPGTNQRQPSKK
200 210 220 230 240 250
150
pF1KE5 MSKVKGLVSSRH
:: ::: .:
CCDS85 ASKGKGLRGSAKIWSKSN
260 270
157 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:13:11 2016 done: Mon Nov 7 22:13:11 2016
Total Scan time: 1.600 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]