FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5165, 140 aa
  1>>>pF1KE5165 140 - 140 aa - 140 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2413+/-0.000682; mu= 11.1564+/- 0.041
 mean_var=53.0351+/-10.655, 0's: 0 Z-trim(108.7): 6  B-trim: 541 in 1/48
 Lambda= 0.176113
 statistics sampled from 10369 (10372) to 10369 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.319), width:  16
 Scan time:  1.750

The best scores are:                                      opt bits E(32554)
CCDS5704.1 POP7 gene_id:10248|Hs108|chr7           ( 140)  906 237.5   2e-63


>>CCDS5704.1 POP7 gene_id:10248|Hs108|chr7                (140 aa)
 initn: 906 init1: 906 opt: 906  Z-score: 1252.1  bits: 237.5 E(32554): 2e-63
Smith-Waterman score: 906; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KE5 MAENREPRGAVEAELDPVEYTLRKRLPSRLPRRPNDIYVNMKTDFKAQLARCQKLLDGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MAENREPRGAVEAELDPVEYTLRKRLPSRLPRRPNDIYVNMKTDFKAQLARCQKLLDGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RGQNACSEIYIHGLGLAINRAINIALQLQAGSFGSLQVAANTSTVELVDELEPETDTREP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 RGQNACSEIYIHGLGLAINRAINIALQLQAGSFGSLQVAANTSTVELVDELEPETDTREP
               70        80        90       100       110       120

              130       140
pF1KE5 LTRIRNNSAIHIRVFRVTPK
       ::::::::::::::::::::
CCDS57 LTRIRNNSAIHIRVFRVTPK
              130       140




140 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:12:42 2016 done: Mon Nov  7 22:12:43 2016
 Total Scan time:  1.750 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]