FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5162, 112 aa
  1>>>pF1KE5162 112 - 112 aa - 112 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9026+/-0.000457; mu= 12.7319+/- 0.028
 mean_var=62.8662+/-12.362, 0's: 0 Z-trim(116.4): 11  B-trim: 0 in 0/52
 Lambda= 0.161758
 statistics sampled from 16979 (16990) to 16979 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.522), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS46115.1 PPM1N gene_id:147699|Hs108|chr19       ( 430)  763 185.5 2.3e-47
CCDS9744.1 PPM1A gene_id:5494|Hs108|chr14          ( 382)  255 66.9   1e-11
CCDS45120.1 PPM1A gene_id:5494|Hs108|chr14         ( 455)  255 66.9 1.2e-11


>>CCDS46115.1 PPM1N gene_id:147699|Hs108|chr19            (430 aa)
 initn: 763 init1: 763 opt: 763  Z-score: 963.8  bits: 185.5 E(32554): 2.3e-47
Smith-Waterman score: 763; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:319-430)

                                             10        20        30
pF1KE5                               MTCILVCFPGAPRPSEEAIRRELALDAALG
                                     ::::::::::::::::::::::::::::::
CCDS46 VASRLRLGLAPELLCAQLLDTCLCKGSLDNMTCILVCFPGAPRPSEEAIRRELALDAALG
      290       300       310       320       330       340        

               40        50        60        70        80        90
pF1KE5 CRIAELCASAQKPPSLNTVFRTLASEDIPDLPPGGGLDCKATVIAEVYSQICQVSEECGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CRIAELCASAQKPPSLNTVFRTLASEDIPDLPPGGGLDCKATVIAEVYSQICQVSEECGE
      350       360       370       380       390       400        

              100       110  
pF1KE5 KGQDGAGKSNPTHLGSALDMEA
       ::::::::::::::::::::::
CCDS46 KGQDGAGKSNPTHLGSALDMEA
      410       420       430

>>CCDS9744.1 PPM1A gene_id:5494|Hs108|chr14               (382 aa)
 initn: 262 init1: 139 opt: 255  Z-score: 323.9  bits: 66.9 E(32554): 1e-11
Smith-Waterman score: 255; 48.8% identity (73.2% similar) in 82 aa overlap (1-81:284-365)

                                             10        20        30
pF1KE5                               MTCILVCFPGAPRPSEEAIRRELALDAALG
                                     :. ::.:::.::. : ::...:  ::  : 
CCDS97 VRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICFPNAPKVSPEAVKKEAELDKYLE
           260       270       280       290       300       310   

                40        50        60        70        80         
pF1KE5 CRIAELCAS-AQKPPSLNTVFRTLASEDIPDLPPGGGLDCKATVIAEVYSQICQVSEECG
       ::. :.  . ..  :.:  :.::::::.::.::::: :  : .::  ::...        
CCDS97 CRVEEIIKKQGEGVPDLVHVMRTLASENIPSLPPGGELASKRNVIEAVYNRLNPYKNDDT
           320       330       340       350       360       370   

      90       100       110  
pF1KE5 EKGQDGAGKSNPTHLGSALDMEA
                              
CCDS97 DSTSTDDMW              
           380                

>>CCDS45120.1 PPM1A gene_id:5494|Hs108|chr14              (455 aa)
 initn: 262 init1: 139 opt: 255  Z-score: 322.8  bits: 66.9 E(32554): 1.2e-11
Smith-Waterman score: 255; 48.8% identity (73.2% similar) in 82 aa overlap (1-81:357-438)

                                             10        20        30
pF1KE5                               MTCILVCFPGAPRPSEEAIRRELALDAALG
                                     :. ::.:::.::. : ::...:  ::  : 
CCDS45 VRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICFPNAPKVSPEAVKKEAELDKYLE
        330       340       350       360       370       380      

                40        50        60        70        80         
pF1KE5 CRIAELCAS-AQKPPSLNTVFRTLASEDIPDLPPGGGLDCKATVIAEVYSQICQVSEECG
       ::. :.  . ..  :.:  :.::::::.::.::::: :  : .::  ::...        
CCDS45 CRVEEIIKKQGEGVPDLVHVMRTLASENIPSLPPGGELASKRNVIEAVYNRLNPYKNDDT
        390       400       410       420       430       440      

      90       100       110  
pF1KE5 EKGQDGAGKSNPTHLGSALDMEA
                              
CCDS45 DSTSTDDMW              
        450                   




112 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:11:06 2016 done: Mon Nov  7 22:11:06 2016
 Total Scan time:  1.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]