FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5158, 148 aa
  1>>>pF1KE5158 148 - 148 aa - 148 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8382+/-0.000294; mu= 14.3213+/- 0.018
 mean_var=60.8912+/-12.126, 0's: 0 Z-trim(117.2): 20  B-trim: 0 in 0/56
 Lambda= 0.164360
 statistics sampled from 28996 (29015) to 28996 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.34), width:  16
 Scan time:  4.460

The best scores are:                                      opt bits E(85289)
NP_000981 (OMIM: 603637) 60S ribosomal protein L27 ( 148) 1019 249.3 1.7e-66


>>NP_000981 (OMIM: 603637) 60S ribosomal protein L27a [H  (148 aa)
 initn: 1019 init1: 1019 opt: 1019  Z-score: 1314.9  bits: 249.3 E(85289): 1.7e-66
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KE5 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ
               70        80        90       100       110       120

              130       140        
pF1KE5 PVIVKAKFFSRRAEEKIKSVGGACVLVA
       ::::::::::::::::::::::::::::
NP_000 PVIVKAKFFSRRAEEKIKSVGGACVLVA
              130       140        




148 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:08:57 2016 done: Mon Nov  7 22:08:57 2016
 Total Scan time:  4.460 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]