FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5158, 148 aa
  1>>>pF1KE5158 148 - 148 aa - 148 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8209+/-0.000629; mu= 14.4205+/- 0.038
 mean_var=59.6100+/-11.780, 0's: 0 Z-trim(110.4): 14  B-trim: 0 in 0/50
 Lambda= 0.166117
 statistics sampled from 11548 (11555) to 11548 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.355), width:  16
 Scan time:  1.560

The best scores are:                                      opt bits E(32554)
CCDS7790.1 RPL27A gene_id:6157|Hs108|chr11         ( 148) 1019 251.7 1.2e-67


>>CCDS7790.1 RPL27A gene_id:6157|Hs108|chr11              (148 aa)
 initn: 1019 init1: 1019 opt: 1019  Z-score: 1328.0  bits: 251.7 E(32554): 1.2e-67
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KE5 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ
               70        80        90       100       110       120

              130       140        
pF1KE5 PVIVKAKFFSRRAEEKIKSVGGACVLVA
       ::::::::::::::::::::::::::::
CCDS77 PVIVKAKFFSRRAEEKIKSVGGACVLVA
              130       140        




148 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:08:56 2016 done: Mon Nov  7 22:08:56 2016
 Total Scan time:  1.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]