FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5157, 126 aa
  1>>>pF1KE5157 126 - 126 aa - 126 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1563+/-0.000544; mu= 12.2548+/- 0.033
 mean_var=57.6178+/-11.228, 0's: 0 Z-trim(113.1): 6  B-trim: 0 in 0/51
 Lambda= 0.168965
 statistics sampled from 13762 (13765) to 13762 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.423), width:  16
 Scan time:  1.780

The best scores are:                                      opt bits E(32554)
CCDS8571.1 C12orf57 gene_id:113246|Hs108|chr12     ( 126)  809 204.2 1.8e-53
CCDS76516.1 C12orf57 gene_id:113246|Hs108|chr12    (  91)  605 154.4 1.3e-38
CCDS76515.1 C12orf57 gene_id:113246|Hs108|chr12    (  97)  337 89.1 6.2e-19


>>CCDS8571.1 C12orf57 gene_id:113246|Hs108|chr12          (126 aa)
 initn: 809 init1: 809 opt: 809  Z-score: 1073.5  bits: 204.2 E(32554): 1.8e-53
Smith-Waterman score: 809; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KE5 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG
               70        80        90       100       110       120

             
pF1KE5 GSVAAS
       ::::::
CCDS85 GSVAAS
             

>>CCDS76516.1 C12orf57 gene_id:113246|Hs108|chr12         (91 aa)
 initn: 605 init1: 605 opt: 605  Z-score: 807.0  bits: 154.4 E(32554): 1.3e-38
Smith-Waterman score: 605; 100.0% identity (100.0% similar) in 91 aa overlap (36-126:1-91)

          10        20        30        40        50        60     
pF1KE5 TQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQIQQEV
                                     ::::::::::::::::::::::::::::::
CCDS76                               MDEARDNACNDMGKMLQFVLPVATQIQQEV
                                             10        20        30

          70        80        90       100       110       120     
pF1KE5 IKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAGGSVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 IKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAGGSVAA
               40        50        60        70        80        90

        
pF1KE5 S
       :
CCDS76 S
        

>>CCDS76515.1 C12orf57 gene_id:113246|Hs108|chr12         (97 aa)
 initn: 337 init1: 337 opt: 337  Z-score: 453.5  bits: 89.1 E(32554): 6.2e-19
Smith-Waterman score: 548; 77.0% identity (77.0% similar) in 126 aa overlap (1-126:1-97)

               10        20        30        40        50        60
pF1KE5 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ
       ::::::::::::::::::::::::::::::::::::::::::::::::            
CCDS76 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMG------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KE5 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG
                        :::::::::::::::::::::::::::::::::::::::::::
CCDS76 -----------------VLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG
                        50        60        70        80        90 

             
pF1KE5 GSVAAS
       ::::::
CCDS76 GSVAAS
             




126 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:08:25 2016 done: Mon Nov  7 22:08:25 2016
 Total Scan time:  1.780 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]