Result of FASTA (omim) for
pFN21AE5156
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5156, 113 aa
1>>>pF1KE5156 113 - 113 aa - 113 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4387+/-0.000321; mu= -1.2042+/- 0.020
mean_var=180.0985+/-37.719, 0's: 0 Z-trim(120.8): 218 B-trim: 33 in 1/57
Lambda= 0.095569
statistics sampled from 36229 (36576) to 36229 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.429), width: 16
Scan time: 3.620
The best scores are: opt bits E(85289)
NP_001166947 (OMIM: 615950,615959) striated muscle ( 113) 767 116.8 7.7e-27
XP_016858651 (OMIM: 615950,615959) PREDICTED: stri ( 170) 767 116.9 1e-26
XP_016858650 (OMIM: 615950,615959) PREDICTED: stri ( 180) 761 116.1 1.9e-26
XP_016858648 (OMIM: 615950,615959) PREDICTED: stri (1830) 753 116.0 2.1e-25
XP_006712256 (OMIM: 615950,615959) PREDICTED: stri (2418) 753 116.1 2.6e-25
XP_005246297 (OMIM: 615950,615959) PREDICTED: stri (2418) 753 116.1 2.6e-25
XP_016858647 (OMIM: 615950,615959) PREDICTED: stri (2418) 753 116.1 2.6e-25
XP_005246298 (OMIM: 615950,615959) PREDICTED: stri (2418) 753 116.1 2.6e-25
XP_005246296 (OMIM: 615950,615959) PREDICTED: stri (2475) 753 116.1 2.6e-25
XP_005246299 (OMIM: 615950,615959) PREDICTED: stri (2480) 753 116.1 2.6e-25
XP_006712252 (OMIM: 615950,615959) PREDICTED: stri (3163) 753 116.2 3.1e-25
XP_005246294 (OMIM: 615950,615959) PREDICTED: stri (3173) 753 116.2 3.1e-25
XP_016858646 (OMIM: 615950,615959) PREDICTED: stri (3175) 753 116.2 3.2e-25
XP_011508785 (OMIM: 615950,615959) PREDICTED: stri (3183) 753 116.2 3.2e-25
NP_005867 (OMIM: 615950,615959) striated muscle pr (3267) 753 116.2 3.2e-25
XP_011508781 (OMIM: 615950,615959) PREDICTED: stri (3277) 753 116.2 3.2e-25
>>NP_001166947 (OMIM: 615950,615959) striated muscle pre (113 aa)
initn: 767 init1: 767 opt: 767 Z-score: 602.8 bits: 116.8 E(85289): 7.7e-27
Smith-Waterman score: 767; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)
10 20 30 40 50 60
pF1KE5 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE
70 80 90 100 110
>>XP_016858651 (OMIM: 615950,615959) PREDICTED: striated (170 aa)
initn: 767 init1: 767 opt: 767 Z-score: 600.6 bits: 116.9 E(85289): 1e-26
Smith-Waterman score: 767; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:58-170)
10 20 30
pF1KE5 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQS
::::::::::::::::::::::::::::::
XP_016 FSSPITSDEEYLSPPEEFPEPGETWPRTPTMKPSPSQNRRSSDTGSKAPPTFKVSLMDQS
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE5 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF
90 100 110 120 130 140
100 110
pF1KE5 YTCKAVNEYGARQCEARLEVRGE
:::::::::::::::::::::::
XP_016 YTCKAVNEYGARQCEARLEVRGE
150 160 170
>>XP_016858650 (OMIM: 615950,615959) PREDICTED: striated (180 aa)
initn: 761 init1: 761 opt: 761 Z-score: 595.8 bits: 116.1 E(85289): 1.9e-26
Smith-Waterman score: 761; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:58-169)
10 20 30
pF1KE5 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQS
::::::::::::::::::::::::::::::
XP_016 FSSPITSDEEYLSPPEEFPEPGETWPRTPTMKPSPSQNRRSSDTGSKAPPTFKVSLMDQS
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE5 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF
90 100 110 120 130 140
100 110
pF1KE5 YTCKAVNEYGARQCEARLEVRGE
::::::::::::::::::::::
XP_016 YTCKAVNEYGARQCEARLEVRGRGRGGRGDGAV
150 160 170 180
>>XP_016858648 (OMIM: 615950,615959) PREDICTED: striated (1830 aa)
initn: 753 init1: 753 opt: 753 Z-score: 577.0 bits: 116.0 E(85289): 2.1e-25
Smith-Waterman score: 753; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:58-168)
10 20 30
pF1KE5 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQS
::::::::::::::::::::::::::::::
XP_016 FSSPITSDEEYLSPPEEFPEPGETWPRTPTMKPSPSQNRRSSDTGSKAPPTFKVSLMDQS
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE5 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF
90 100 110 120 130 140
100 110
pF1KE5 YTCKAVNEYGARQCEARLEVRGE
:::::::::::::::::::::
XP_016 YTCKAVNEYGARQCEARLEVRAHPESRSLAVLAPLQDVDVGAGEMALFECLVAGPTDVEV
150 160 170 180 190 200
>>XP_006712256 (OMIM: 615950,615959) PREDICTED: striated (2418 aa)
initn: 753 init1: 753 opt: 753 Z-score: 575.4 bits: 116.1 E(85289): 2.6e-25
Smith-Waterman score: 753; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE5 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRAHPESRSLA
70 80 90 100 110 120
XP_006 VLAPLQDVDVGAGEMALFECLVAGPTDVEVDWLCRGRLLQPALLKCKMHFDGRKCKLLLT
130 140 150 160 170 180
>>XP_005246297 (OMIM: 615950,615959) PREDICTED: striated (2418 aa)
initn: 753 init1: 753 opt: 753 Z-score: 575.4 bits: 116.1 E(85289): 2.6e-25
Smith-Waterman score: 753; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE5 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRAHPESRSLA
70 80 90 100 110 120
XP_005 VLAPLQDVDVGAGEMALFECLVAGPTDVEVDWLCRGRLLQPALLKCKMHFDGRKCKLLLT
130 140 150 160 170 180
>>XP_016858647 (OMIM: 615950,615959) PREDICTED: striated (2418 aa)
initn: 753 init1: 753 opt: 753 Z-score: 575.4 bits: 116.1 E(85289): 2.6e-25
Smith-Waterman score: 753; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE5 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRAHPESRSLA
70 80 90 100 110 120
XP_016 VLAPLQDVDVGAGEMALFECLVAGPTDVEVDWLCRGRLLQPALLKCKMHFDGRKCKLLLT
130 140 150 160 170 180
>>XP_005246298 (OMIM: 615950,615959) PREDICTED: striated (2418 aa)
initn: 753 init1: 753 opt: 753 Z-score: 575.4 bits: 116.1 E(85289): 2.6e-25
Smith-Waterman score: 753; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)
10 20 30 40 50 60
pF1KE5 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRAHPESRSLA
70 80 90 100 110 120
XP_005 VLAPLQDVDVGAGEMALFECLVAGPTDVEVDWLCRGRLLQPALLKCKMHFDGRKCKLLLT
130 140 150 160 170 180
>>XP_005246296 (OMIM: 615950,615959) PREDICTED: striated (2475 aa)
initn: 753 init1: 753 opt: 753 Z-score: 575.3 bits: 116.1 E(85289): 2.6e-25
Smith-Waterman score: 753; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:58-168)
10 20 30
pF1KE5 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQS
::::::::::::::::::::::::::::::
XP_005 FSSPITSDEEYLSPPEEFPEPGETWPRTPTMKPSPSQNRRSSDTGSKAPPTFKVSLMDQS
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE5 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF
90 100 110 120 130 140
100 110
pF1KE5 YTCKAVNEYGARQCEARLEVRGE
:::::::::::::::::::::
XP_005 YTCKAVNEYGARQCEARLEVRAHPESRSLAVLAPLQDVDVGAGEMALFECLVAGPTDVEV
150 160 170 180 190 200
>>XP_005246299 (OMIM: 615950,615959) PREDICTED: striated (2480 aa)
initn: 753 init1: 753 opt: 753 Z-score: 575.3 bits: 116.1 E(85289): 2.6e-25
Smith-Waterman score: 753; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:63-173)
10 20 30
pF1KE5 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQS
::::::::::::::::::::::::::::::
XP_005 FSSPITSDEEYLSPPEEFPEPGETWPRTPTMKPSPSQNRRSSDTGSKAPPTFKVSLMDQS
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE5 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF
100 110 120 130 140 150
100 110
pF1KE5 YTCKAVNEYGARQCEARLEVRGE
:::::::::::::::::::::
XP_005 YTCKAVNEYGARQCEARLEVRAHPESRSLAVLAPLQDVDVGAGEMALFECLVAGPTDVEV
160 170 180 190 200 210
113 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:03:01 2016 done: Mon Nov 7 22:03:02 2016
Total Scan time: 3.620 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]