FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5156, 113 aa
  1>>>pF1KE5156 113 - 113 aa - 113 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0571+/-0.000646; mu= 6.6532+/- 0.038
 mean_var=102.6944+/-21.285, 0's: 0 Z-trim(113.6): 112  B-trim: 281 in 1/50
 Lambda= 0.126561
 statistics sampled from 14075 (14243) to 14075 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.438), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS54432.1 SPEG gene_id:10290|Hs108|chr2          ( 113)  767 149.3 4.8e-37
CCDS42824.1 SPEG gene_id:10290|Hs108|chr2          (3267)  753 147.8 3.7e-35


>>CCDS54432.1 SPEG gene_id:10290|Hs108|chr2               (113 aa)
 initn: 767 init1: 767 opt: 767  Z-score: 778.5  bits: 149.3 E(32554): 4.8e-37
Smith-Waterman score: 767; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KE5 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MKPSPSQNRRSSDTGSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV
               10        20        30        40        50        60

               70        80        90       100       110   
pF1KE5 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE
               70        80        90       100       110   

>>CCDS42824.1 SPEG gene_id:10290|Hs108|chr2               (3267 aa)
 initn: 753 init1: 753 opt: 753  Z-score: 744.6  bits: 147.8 E(32554): 3.7e-35
Smith-Waterman score: 753; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:850-960)

                                             10        20        30
pF1KE5                               MKPSPSQNRRSSDTGSKAPPTFKVSLMDQS
                                     ::::::::::::::::::::::::::::::
CCDS42 FSSPITSDEEYLSPPEEFPEPGETWPRTPTMKPSPSQNRRSSDTGSKAPPTFKVSLMDQS
     820       830       840       850       860       870         

               40        50        60        70        80        90
pF1KE5 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF
     880       890       900       910       920       930         

              100       110                                        
pF1KE5 YTCKAVNEYGARQCEARLEVRGE                                     
       :::::::::::::::::::::                                       
CCDS42 YTCKAVNEYGARQCEARLEVRAHPESRSLAVLAPLQDVDVGAGEMALFECLVAGPTDVEV
     940       950       960       970       980       990         




113 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:03:01 2016 done: Mon Nov  7 22:03:01 2016
 Total Scan time:  1.390 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]