FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5154, 100 aa
  1>>>pF1KE5154 100 - 100 aa - 100 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5119+/-0.000556; mu= 10.6378+/- 0.034
 mean_var=104.6881+/-21.975, 0's: 0 Z-trim(115.8): 121  B-trim: 852 in 1/51
 Lambda= 0.125350
 statistics sampled from 16254 (16415) to 16254 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.504), width:  16
 Scan time:  1.350

The best scores are:                                      opt bits E(32554)
CCDS35070.2 BARX1 gene_id:56033|Hs108|chr9         ( 254)  667 129.6 7.8e-31
CCDS8481.1 BARX2 gene_id:8538|Hs108|chr11          ( 279)  447 89.9 7.9e-19


>>CCDS35070.2 BARX1 gene_id:56033|Hs108|chr9              (254 aa)
 initn: 667 init1: 667 opt: 667  Z-score: 667.0  bits: 129.6 E(32554): 7.8e-31
Smith-Waterman score: 667; 100.0% identity (100.0% similar) in 100 aa overlap (1-100:155-254)

                                             10        20        30
pF1KE5                               MGLEKRFEKQKYLSTPDRIDLAESLGLSQL
                                     ::::::::::::::::::::::::::::::
CCDS35 GKLEAAGPGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQL
          130       140       150       160       170       180    

               40        50        60        70        80        90
pF1KE5 QVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKDAEKPAEVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKDAEKPAEVP
          190       200       210       220       230       240    

              100
pF1KE5 GEPSDRSRED
       ::::::::::
CCDS35 GEPSDRSRED
          250    

>>CCDS8481.1 BARX2 gene_id:8538|Hs108|chr11               (279 aa)
 initn: 454 init1: 315 opt: 447  Z-score: 451.5  bits: 89.9 E(32554): 7.9e-19
Smith-Waterman score: 447; 68.7% identity (86.9% similar) in 99 aa overlap (1-99:146-242)

                                             10        20        30
pF1KE5                               MGLEKRFEKQKYLSTPDRIDLAESLGLSQL
                                     :::::.:.::::::::::.:::.::::.::
CCDS84 LASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQL
         120       130       140       150       160       170     

               40        50        60        70        80        90
pF1KE5 QVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKDAEKPAEVP
       :::::::::::::::.::.::  :.:::::::::::::::::..  .:. ..  .  :  
CCDS84 QVKTWYQNRRMKWKKMVLKGGQ-EAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQGQE-Q
         180       190        200       210       220       230    

              100                                    
pF1KE5 GEPSDRSRED                                    
        :::. ..:                                     
CCDS84 LEPSQGQEELCEAQEPKARDVPLEMAEPPDPPQELPIPSSEPPPLS
           240       250       260       270         




100 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:01:57 2016 done: Mon Nov  7 22:01:57 2016
 Total Scan time:  1.350 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]