FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5153, 106 aa
  1>>>pF1KE5153 106 - 106 aa - 106 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5996+/-0.000301; mu= 5.2444+/- 0.019
 mean_var=115.8102+/-23.342, 0's: 0 Z-trim(120.7): 3  B-trim: 1039 in 2/59
 Lambda= 0.119179
 statistics sampled from 36247 (36250) to 36247 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.425), width:  16
 Scan time:  4.540

The best scores are:                                      opt bits E(85289)
NP_057395 (OMIM: 614981) ATPase inhibitor, mitocho ( 106)  699 129.5 9.9e-31
NP_835498 (OMIM: 614981) ATPase inhibitor, mitocho (  60)  400 77.9 1.9e-15
NP_835497 (OMIM: 614981) ATPase inhibitor, mitocho (  71)  400 78.0 2.2e-15


>>NP_057395 (OMIM: 614981) ATPase inhibitor, mitochondri  (106 aa)
 initn: 699 init1: 699 opt: 699  Z-score: 672.7  bits: 129.5 E(85289): 9.9e-31
Smith-Waterman score: 699; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KE5 MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
               10        20        30        40        50        60

               70        80        90       100      
pF1KE5 AQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQKIKMLKHDD
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQKIKMLKHDD
               70        80        90       100      

>>NP_835498 (OMIM: 614981) ATPase inhibitor, mitochondri  (60 aa)
 initn: 400 init1: 400 opt: 400  Z-score: 398.4  bits: 77.9 E(85289): 1.9e-15
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 60 aa overlap (1-60:1-60)

               10        20        30        40        50        60
pF1KE5 MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
               10        20        30        40        50        60

               70        80        90       100      
pF1KE5 AQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQKIKMLKHDD

>>NP_835497 (OMIM: 614981) ATPase inhibitor, mitochondri  (71 aa)
 initn: 400 init1: 400 opt: 400  Z-score: 397.4  bits: 78.0 E(85289): 2.2e-15
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 60 aa overlap (1-60:1-60)

               10        20        30        40        50        60
pF1KE5 MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_835 MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
               10        20        30        40        50        60

               70        80        90       100      
pF1KE5 AQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQKIKMLKHDD
                                                     
NP_835 HYRLCFEISLG                                   
               70                                    




106 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:01:26 2016 done: Mon Nov  7 22:01:27 2016
 Total Scan time:  4.540 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]