FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5153, 106 aa
  1>>>pF1KE5153 106 - 106 aa - 106 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7186+/-0.000711; mu= 4.3220+/- 0.043
 mean_var=111.8172+/-22.137, 0's: 0 Z-trim(113.3): 5  B-trim: 170 in 1/53
 Lambda= 0.121289
 statistics sampled from 13930 (13933) to 13930 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.428), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS319.1 ATPIF1 gene_id:93974|Hs108|chr1          ( 106)  699 131.6 8.9e-32
CCDS44096.1 ATPIF1 gene_id:93974|Hs108|chr1        (  60)  400 79.1 3.2e-16
CCDS320.1 ATPIF1 gene_id:93974|Hs108|chr1          (  71)  400 79.2 3.6e-16


>>CCDS319.1 ATPIF1 gene_id:93974|Hs108|chr1               (106 aa)
 initn: 699 init1: 699 opt: 699  Z-score: 683.9  bits: 131.6 E(32554): 8.9e-32
Smith-Waterman score: 699; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KE5 MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
               10        20        30        40        50        60

               70        80        90       100      
pF1KE5 AQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQKIKMLKHDD
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQKIKMLKHDD
               70        80        90       100      

>>CCDS44096.1 ATPIF1 gene_id:93974|Hs108|chr1             (60 aa)
 initn: 400 init1: 400 opt: 400  Z-score: 404.8  bits: 79.1 E(32554): 3.2e-16
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 60 aa overlap (1-60:1-60)

               10        20        30        40        50        60
pF1KE5 MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
               10        20        30        40        50        60

               70        80        90       100      
pF1KE5 AQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQKIKMLKHDD

>>CCDS320.1 ATPIF1 gene_id:93974|Hs108|chr1               (71 aa)
 initn: 400 init1: 400 opt: 400  Z-score: 403.7  bits: 79.2 E(32554): 3.6e-16
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 60 aa overlap (1-60:1-60)

               10        20        30        40        50        60
pF1KE5 MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAVTALAARTWLGVWGVRTMQARGFGSDQSENVDRGAGSIREAGGAFGKREQAEEERYFR
               10        20        30        40        50        60

               70        80        90       100      
pF1KE5 AQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQKIKMLKHDD
                                                     
CCDS32 HYRLCFEISLG                                   
               70                                    




106 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:01:25 2016 done: Mon Nov  7 22:01:26 2016
 Total Scan time:  1.600 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]