FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5151, 86 aa
  1>>>pF1KE5151 86 - 86 aa - 86 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5449+/-0.000317; mu= 11.8469+/- 0.020
 mean_var=49.5962+/- 9.877, 0's: 0 Z-trim(114.1): 7  B-trim: 825 in 1/57
 Lambda= 0.182117
 statistics sampled from 23738 (23740) to 23738 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.278), width:  16
 Scan time:  3.680

The best scores are:                                      opt bits E(85289)
NP_003124 (OMIM: 600707) signal recognition partic (  86)  565 155.5 9.5e-39
NP_001123912 (OMIM: 600707) signal recognition par (  82)  322 91.7 1.5e-19


>>NP_003124 (OMIM: 600707) signal recognition particle 9  (86 aa)
 initn: 565 init1: 565 opt: 565  Z-score: 816.7  bits: 155.5 E(85289): 9.5e-39
Smith-Waterman score: 565; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86)

               10        20        30        40        50        60
pF1KE5 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK
               10        20        30        40        50        60

               70        80      
pF1KE5 KIEKFHSQLMRLMVAKEARNVTMETE
       ::::::::::::::::::::::::::
NP_003 KIEKFHSQLMRLMVAKEARNVTMETE
               70        80      

>>NP_001123912 (OMIM: 600707) signal recognition particl  (82 aa)
 initn: 324 init1: 318 opt: 322  Z-score: 471.9  bits: 91.7 E(85289): 1.5e-19
Smith-Waterman score: 322; 96.1% identity (96.1% similar) in 51 aa overlap (1-49:1-51)

               10        20        30        40          50        
pF1KE5 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLV--CLVYKTDQAQD
       :::::::::::::::::::::::::::::::::::::::::::::::  ::         
NP_001 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQCS
               10        20        30        40        50        60

       60        70        80      
pF1KE5 VKKIEKFHSQLMRLMVAKEARNVTMETE
                                   
NP_001 GMIIAHCILDLLGSSGPLASAS      
               70        80        




86 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:00:24 2016 done: Mon Nov  7 22:00:25 2016
 Total Scan time:  3.680 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]