FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5150, 86 aa
  1>>>pF1KE5150 86 - 86 aa - 86 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3015+/-0.000262; mu= 12.7841+/- 0.016
 mean_var=44.3994+/- 8.746, 0's: 0 Z-trim(118.7): 28  B-trim: 25 in 1/53
 Lambda= 0.192480
 statistics sampled from 31991 (32024) to 31991 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.375), width:  16
 Scan time:  3.840

The best scores are:                                      opt bits E(85289)
NP_003086 (OMIM: 603541) small nuclear ribonucleop (  86)  578 166.7 4.1e-42
XP_016863161 (OMIM: 607286) PREDICTED: U6 snRNA-as (  80)  238 72.3   1e-13
XP_016863162 (OMIM: 607286) PREDICTED: U6 snRNA-as (  80)  238 72.3   1e-13
NP_009011 (OMIM: 607286) U6 snRNA-associated Sm-li (  80)  238 72.3   1e-13
NP_036453 (OMIM: 607284) U6 snRNA-associated Sm-li ( 139)  118 39.1  0.0017


>>NP_003086 (OMIM: 603541) small nuclear ribonucleoprote  (86 aa)
 initn: 578 init1: 578 opt: 578  Z-score: 877.1  bits: 166.7 E(85289): 4.1e-42
Smith-Waterman score: 578; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86)

               10        20        30        40        50        60
pF1KE5 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG
               10        20        30        40        50        60

               70        80      
pF1KE5 EVLIRCNNVLYIRGVEEEEEDGEMRE
       ::::::::::::::::::::::::::
NP_003 EVLIRCNNVLYIRGVEEEEEDGEMRE
               70        80      

>>XP_016863161 (OMIM: 607286) PREDICTED: U6 snRNA-associ  (80 aa)
 initn: 236 init1: 236 opt: 238  Z-score: 367.3  bits: 72.3 E(85289): 1e-13
Smith-Waterman score: 238; 50.7% identity (80.8% similar) in 73 aa overlap (1-72:1-73)

                10        20        30        40        50         
pF1KE5 MSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL
       :::   .:. ::. . :.::.:::. :..:.: :. .:::::. : .::::..: :... 
XP_016 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
               10        20        30        40        50        60

      60        70        80      
pF1KE5 GEVLIRCNNVLYIRGVEEEEEDGEMRE
       :...:: ::::::              
XP_016 GDAFIRGNNVLYISTQKRRM       
               70        80       

>>XP_016863162 (OMIM: 607286) PREDICTED: U6 snRNA-associ  (80 aa)
 initn: 236 init1: 236 opt: 238  Z-score: 367.3  bits: 72.3 E(85289): 1e-13
Smith-Waterman score: 238; 50.7% identity (80.8% similar) in 73 aa overlap (1-72:1-73)

                10        20        30        40        50         
pF1KE5 MSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL
       :::   .:. ::. . :.::.:::. :..:.: :. .:::::. : .::::..: :... 
XP_016 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
               10        20        30        40        50        60

      60        70        80      
pF1KE5 GEVLIRCNNVLYIRGVEEEEEDGEMRE
       :...:: ::::::              
XP_016 GDAFIRGNNVLYISTQKRRM       
               70        80       

>>NP_009011 (OMIM: 607286) U6 snRNA-associated Sm-like p  (80 aa)
 initn: 236 init1: 236 opt: 238  Z-score: 367.3  bits: 72.3 E(85289): 1e-13
Smith-Waterman score: 238; 50.7% identity (80.8% similar) in 73 aa overlap (1-72:1-73)

                10        20        30        40        50         
pF1KE5 MSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL
       :::   .:. ::. . :.::.:::. :..:.: :. .:::::. : .::::..: :... 
NP_009 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
               10        20        30        40        50        60

      60        70        80      
pF1KE5 GEVLIRCNNVLYIRGVEEEEEDGEMRE
       :...:: ::::::              
NP_009 GDAFIRGNNVLYISTQKRRM       
               70        80       

>>NP_036453 (OMIM: 607284) U6 snRNA-associated Sm-like p  (139 aa)
 initn:  99 init1:  75 opt: 118  Z-score: 183.7  bits: 39.1 E(85289): 0.0017
Smith-Waterman score: 118; 34.7% identity (61.3% similar) in 75 aa overlap (7-77:3-74)

               10        20        30        40        50          
pF1KE5 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI----DGALS
             :  .:.   ..:..:.:: :  :.:.::: :..::.   : .: :    ::   
NP_036     MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNI---NLREVICTSRDGDKF
                   10        20        30           40        50   

         60        70        80                                    
pF1KE5 GHLGEVLIRCNNVLYIRGVEEEEEDGEMRE                              
        .. :  :: ... :.:  .:                                       
NP_036 WRMPECYIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFG
            60        70        80        90       100       110   




86 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:59:48 2016 done: Mon Nov  7 21:59:49 2016
 Total Scan time:  3.840 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]