FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5146, 138 aa
  1>>>pF1KE5146 138 - 138 aa - 138 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3842+/-0.000239; mu= 13.1019+/- 0.015
 mean_var=85.2438+/-17.307, 0's: 0 Z-trim(124.0): 4  B-trim: 1035 in 1/57
 Lambda= 0.138913
 statistics sampled from 44728 (44741) to 44728 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.842), E-opt: 0.2 (0.525), width:  16
 Scan time:  5.100

The best scores are:                                      opt bits E(85289)
NP_001025032 (OMIM: 608228) nanos homolog 2 [Homo  ( 138)  994 207.2 6.7e-54
NP_001092092 (OMIM: 608229) nanos homolog 3 [Homo  ( 192)  355 79.3   3e-15
XP_011526266 (OMIM: 608229) PREDICTED: nanos homol ( 196)  355 79.3 3.1e-15
NP_955631 (OMIM: 608226,615413) nanos homolog 1 [H ( 292)  284 65.2   8e-11


>>NP_001025032 (OMIM: 608228) nanos homolog 2 [Homo sapi  (138 aa)
 initn: 994 init1: 994 opt: 994  Z-score: 1088.7  bits: 207.2 E(85289): 6.7e-54
Smith-Waterman score: 994; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KE5 MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ
               70        80        90       100       110       120

              130        
pF1KE5 QSLYRRSGRNSAGRRVKR
       ::::::::::::::::::
NP_001 QSLYRRSGRNSAGRRVKR
              130        

>>NP_001092092 (OMIM: 608229) nanos homolog 3 [Homo sapi  (192 aa)
 initn: 457 init1: 292 opt: 355  Z-score: 394.7  bits: 79.3 E(85289): 3e-15
Smith-Waterman score: 402; 44.0% identity (64.7% similar) in 150 aa overlap (6-138:4-153)

               10        20          30        40             50   
pF1KE5 MQLPPFDMWKDYFNLSQVVWALIASRGQ--RLETQEIEEPSPGP-----PLGQDQGLGAP
            ::.: ::..:...: :: ...:   ::  :   ::   :     :.   ... .:
NP_001   MGTFDLWTDYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVP
                 10        20        30        40        50        

            60                 70        80        90       100    
pF1KE5 GANGGLGTL---------CNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGAT
       : .    .:         :.::::::::: .:.:: ::   : :.::::: :::: ::::
NP_001 GPKDQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGAT
       60        70        80        90       100       110        

          110        120       130                                 
pF1KE5 GDQAHTLKYCPLNG-GQQSLYRRSGRNSAGRRVKR                         
        ..::: ..:::.: :  :.: .. :::::... :                         
NP_001 RERAHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGFRGAG
      120       130       140       150       160       170        

NP_001 KSEPSPSCSPSMST
      180       190  

>>XP_011526266 (OMIM: 608229) PREDICTED: nanos homolog 3  (196 aa)
 initn: 435 init1: 292 opt: 355  Z-score: 394.6  bits: 79.3 E(85289): 3.1e-15
Smith-Waterman score: 402; 44.0% identity (64.7% similar) in 150 aa overlap (6-138:4-153)

               10        20          30        40             50   
pF1KE5 MQLPPFDMWKDYFNLSQVVWALIASRGQ--RLETQEIEEPSPGP-----PLGQDQGLGAP
            ::.: ::..:...: :: ...:   ::  :   ::   :     :.   ... .:
XP_011   MGTFDLWTDYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVP
                 10        20        30        40        50        

            60                 70        80        90       100    
pF1KE5 GANGGLGTL---------CNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGAT
       : .    .:         :.::::::::: .:.:: ::   : :.::::: :::: ::::
XP_011 GPKDQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGAT
       60        70        80        90       100       110        

          110        120       130                                 
pF1KE5 GDQAHTLKYCPLNG-GQQSLYRRSGRNSAGRRVKR                         
        ..::: ..:::.: :  :.: .. :::::... :                         
XP_011 RERAHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGACTGF
      120       130       140       150       160       170        

XP_011 RGAGKSEPSPSCSPSMST
      180       190      

>>NP_955631 (OMIM: 608226,615413) nanos homolog 1 [Homo   (292 aa)
 initn: 371 init1: 271 opt: 284  Z-score: 315.3  bits: 65.2 E(85289): 8e-11
Smith-Waterman score: 284; 47.5% identity (76.2% similar) in 80 aa overlap (62-137:213-292)

              40        50        60        70        80        90 
pF1KE5 TQEIEEPSPGPPLGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCP
                                     .: ::..: :.  .:..: :: ::: :.::
NP_955 EERAPAWAAEPRLHAASGAAAARLLKPELQVCVFCRNNKEAMALYTTHILKGPDGRVLCP
            190       200       210       220       230       240  

             100       110       120          130         
pF1KE5 ILRHYVCPVCGATGDQAHTLKYCPLNGGQQSLYR---RSGRNSA-GRRVKR
       .::.:.::.:::.::.:::.:::::.       :   ::.:..  :.... 
NP_955 VLRRYTCPLCGASGDNAHTIKYCPLSKVPPPPARPPPRSARDGPPGKKLR 
            250       260       270       280       290   




138 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:49:01 2016 done: Mon Nov  7 21:49:01 2016
 Total Scan time:  5.100 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]