FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5146, 138 aa
  1>>>pF1KE5146 138 - 138 aa - 138 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7673+/-0.000516; mu= 11.1621+/- 0.031
 mean_var=86.5875+/-17.327, 0's: 0 Z-trim(116.8): 4  B-trim: 0 in 0/51
 Lambda= 0.137831
 statistics sampled from 17445 (17449) to 17445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.536), width:  16
 Scan time:  1.430

The best scores are:                                      opt bits E(32554)
CCDS33056.1 NANOS2 gene_id:339345|Hs108|chr19      ( 138)  994 205.7 7.2e-54
CCDS42511.1 NANOS3 gene_id:342977|Hs108|chr19      ( 192)  355 78.8 1.7e-15
CCDS7607.1 NANOS1 gene_id:340719|Hs108|chr10       ( 292)  284 64.8 4.2e-11


>>CCDS33056.1 NANOS2 gene_id:339345|Hs108|chr19           (138 aa)
 initn: 994 init1: 994 opt: 994  Z-score: 1080.5  bits: 205.7 E(32554): 7.2e-54
Smith-Waterman score: 994; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KE5 MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MQLPPFDMWKDYFNLSQVVWALIASRGQRLETQEIEEPSPGPPLGQDQGLGAPGANGGLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TLCNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGATGDQAHTLKYCPLNGGQ
               70        80        90       100       110       120

              130        
pF1KE5 QSLYRRSGRNSAGRRVKR
       ::::::::::::::::::
CCDS33 QSLYRRSGRNSAGRRVKR
              130        

>>CCDS42511.1 NANOS3 gene_id:342977|Hs108|chr19           (192 aa)
 initn: 457 init1: 292 opt: 355  Z-score: 391.8  bits: 78.8 E(32554): 1.7e-15
Smith-Waterman score: 402; 44.0% identity (64.7% similar) in 150 aa overlap (6-138:4-153)

               10        20          30        40             50   
pF1KE5 MQLPPFDMWKDYFNLSQVVWALIASRGQ--RLETQEIEEPSPGP-----PLGQDQGLGAP
            ::.: ::..:...: :: ...:   ::  :   ::   :     :.   ... .:
CCDS42   MGTFDLWTDYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVP
                 10        20        30        40        50        

            60                 70        80        90       100    
pF1KE5 GANGGLGTL---------CNFCKHNGESRHVYSSHQLKTPDGVVVCPILRHYVCPVCGAT
       : .    .:         :.::::::::: .:.:: ::   : :.::::: :::: ::::
CCDS42 GPKDQKRSLESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGAT
       60        70        80        90       100       110        

          110        120       130                                 
pF1KE5 GDQAHTLKYCPLNG-GQQSLYRRSGRNSAGRRVKR                         
        ..::: ..:::.: :  :.: .. :::::... :                         
CCDS42 RERAHTRRFCPLTGQGYTSVYSHTTRNSAGKKLVRPDKAKTQDTGHRRGGGGGAGFRGAG
      120       130       140       150       160       170        

CCDS42 KSEPSPSCSPSMST
      180       190  

>>CCDS7607.1 NANOS1 gene_id:340719|Hs108|chr10            (292 aa)
 initn: 371 init1: 271 opt: 284  Z-score: 312.9  bits: 64.8 E(32554): 4.2e-11
Smith-Waterman score: 284; 47.5% identity (76.2% similar) in 80 aa overlap (62-137:213-292)

              40        50        60        70        80        90 
pF1KE5 TQEIEEPSPGPPLGQDQGLGAPGANGGLGTLCNFCKHNGESRHVYSSHQLKTPDGVVVCP
                                     .: ::..: :.  .:..: :: ::: :.::
CCDS76 EERAPAWAAEPRLHAASGAAAARLLKPELQVCVFCRNNKEAMALYTTHILKGPDGRVLCP
            190       200       210       220       230       240  

             100       110       120          130         
pF1KE5 ILRHYVCPVCGATGDQAHTLKYCPLNGGQQSLYR---RSGRNSA-GRRVKR
       .::.:.::.:::.::.:::.:::::.       :   ::.:..  :.... 
CCDS76 VLRRYTCPLCGASGDNAHTIKYCPLSKVPPPPARPPPRSARDGPPGKKLR 
            250       260       270       280       290   




138 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:49:00 2016 done: Mon Nov  7 21:49:00 2016
 Total Scan time:  1.430 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]