Result of FASTA (ccds) for
pFN21AE5142
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5142, 104 aa
1>>>pF1KE5142 104 - 104 aa - 104 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9383+/-0.000542; mu= 11.0854+/- 0.033
mean_var=50.5723+/-10.169, 0's: 0 Z-trim(111.6): 17 B-trim: 0 in 0/52
Lambda= 0.180351
statistics sampled from 12486 (12503) to 12486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.384), width: 16
Scan time: 1.310
The best scores are: opt bits E(32554)
CCDS55000.1 PGC gene_id:5225|Hs108|chr6 ( 315) 636 172.4 1.3e-43
CCDS4859.1 PGC gene_id:5225|Hs108|chr6 ( 388) 636 172.5 1.6e-43
CCDS31574.1 PGA3 gene_id:643834|Hs108|chr11 ( 388) 269 77.0 8.9e-15
CCDS31575.1 PGA4 gene_id:643847|Hs108|chr11 ( 388) 268 76.7 1.1e-14
CCDS8001.1 PGA5 gene_id:5222|Hs108|chr11 ( 388) 268 76.7 1.1e-14
CCDS73012.1 CTSE gene_id:1510|Hs108|chr1 ( 363) 231 67.1 8e-12
CCDS73013.1 CTSE gene_id:1510|Hs108|chr1 ( 396) 231 67.1 8.6e-12
CCDS7725.1 CTSD gene_id:1509|Hs108|chr11 ( 412) 229 66.6 1.3e-11
>>CCDS55000.1 PGC gene_id:5225|Hs108|chr6 (315 aa)
initn: 636 init1: 636 opt: 636 Z-score: 896.3 bits: 172.4 E(32554): 1.3e-43
Smith-Waterman score: 636; 99.0% identity (99.0% similar) in 97 aa overlap (1-97:1-97)
10 20 30 40 50 60
pF1KE5 MKWMVVVLVCLQLLEAAVVKVPLKKFKSIRETMKEKGLLGEFLRTHKYDPAWKYRFGDLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MKWMVVVLVCLQLLEAAVVKVPLKKFKSIRETMKEKGLLGEFLRTHKYDPAWKYRFGDLS
10 20 30 40 50 60
70 80 90 100
pF1KE5 VTYEPMAYMDAAYFGEISIGTPPQNFLVLFDTGSSPLPLDPAPS
::::::::::::::::::::::::::::::::::: :
CCDS55 VTYEPMAYMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSES
70 80 90 100 110 120
CCDS55 STYSTNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIM
130 140 150 160 170 180
>>CCDS4859.1 PGC gene_id:5225|Hs108|chr6 (388 aa)
initn: 651 init1: 636 opt: 636 Z-score: 894.8 bits: 172.5 E(32554): 1.6e-43
Smith-Waterman score: 636; 99.0% identity (99.0% similar) in 97 aa overlap (1-97:1-97)
10 20 30 40 50 60
pF1KE5 MKWMVVVLVCLQLLEAAVVKVPLKKFKSIRETMKEKGLLGEFLRTHKYDPAWKYRFGDLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MKWMVVVLVCLQLLEAAVVKVPLKKFKSIRETMKEKGLLGEFLRTHKYDPAWKYRFGDLS
10 20 30 40 50 60
70 80 90 100
pF1KE5 VTYEPMAYMDAAYFGEISIGTPPQNFLVLFDTGSSPLPLDPAPS
::::::::::::::::::::::::::::::::::: :
CCDS48 VTYEPMAYMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSES
70 80 90 100 110 120
CCDS48 STYSTNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIM
130 140 150 160 170 180
>>CCDS31574.1 PGA3 gene_id:643834|Hs108|chr11 (388 aa)
initn: 275 init1: 135 opt: 269 Z-score: 378.7 bits: 77.0 E(32554): 8.9e-15
Smith-Waterman score: 269; 47.6% identity (70.9% similar) in 103 aa overlap (1-97:1-100)
10 20 30 40 50
pF1KE5 MKWMVVV-LVCLQLLEAAVVKVPLKKFKSIRETMKEKGLLGEFLRTHKYDPAWKYRFGDL
:::.... :: :. : . :::: . ::.:.:..:.::: .::. :. .:: :: : .
CCDS31 MKWLLLLGLVALS--ECIMYKVPLIRKKSLRRTLSERGLLKDFLKKHNLNPARKY-FPQW
10 20 30 40 50
60 70 80 90 100
pF1KE5 S----VTYEPMA-YMDAAYFGEISIGTPPQNFLVLFDTGSSPLPLDPAPS
. : .:. :.: ::: :.:::: :.: :.:::::: :
CCDS31 KAPTLVDEQPLENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNR
60 70 80 90 100 110
CCDS31 FNPEDSSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA
120 130 140 150 160 170
>>CCDS31575.1 PGA4 gene_id:643847|Hs108|chr11 (388 aa)
initn: 275 init1: 135 opt: 268 Z-score: 377.3 bits: 76.7 E(32554): 1.1e-14
Smith-Waterman score: 268; 47.6% identity (69.9% similar) in 103 aa overlap (1-97:1-100)
10 20 30 40 50
pF1KE5 MKWMVVV-LVCLQLLEAAVVKVPLKKFKSIRETMKEKGLLGEFLRTHKYDPAWKYRFGDL
:::.... :: :. : . :::: . ::.:.:..:.::: .::. :. .:: :: : .
CCDS31 MKWLLLLGLVALS--ECIMYKVPLIRKKSLRRTLSERGLLKDFLKKHNLNPARKY-FPQW
10 20 30 40 50
60 70 80 90 100
pF1KE5 S----VTYEPMA-YMDAAYFGEISIGTPPQNFLVLFDTGSSPLPLDPAPS
: .:. :.: ::: :.:::: :.: :.:::::: :
CCDS31 EAPTLVDEQPLENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNR
60 70 80 90 100 110
CCDS31 FNPEDSSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA
120 130 140 150 160 170
>>CCDS8001.1 PGA5 gene_id:5222|Hs108|chr11 (388 aa)
initn: 275 init1: 135 opt: 268 Z-score: 377.3 bits: 76.7 E(32554): 1.1e-14
Smith-Waterman score: 268; 47.6% identity (69.9% similar) in 103 aa overlap (1-97:1-100)
10 20 30 40 50
pF1KE5 MKWMVVV-LVCLQLLEAAVVKVPLKKFKSIRETMKEKGLLGEFLRTHKYDPAWKYRFGDL
:::.... :: :. : . :::: . ::.:.:..:.::: .::. :. .:: :: : .
CCDS80 MKWLLLLGLVALS--ECIMYKVPLIRKKSLRRTLSERGLLKDFLKKHNLNPARKY-FPQW
10 20 30 40 50
60 70 80 90 100
pF1KE5 S----VTYEPMA-YMDAAYFGEISIGTPPQNFLVLFDTGSSPLPLDPAPS
: .:. :.: ::: :.:::: :.: :.:::::: :
CCDS80 EAPTLVDEQPLENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNR
60 70 80 90 100 110
CCDS80 FNPEDSSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYA
120 130 140 150 160 170
>>CCDS73012.1 CTSE gene_id:1510|Hs108|chr1 (363 aa)
initn: 234 init1: 138 opt: 231 Z-score: 325.8 bits: 67.1 E(32554): 8e-12
Smith-Waterman score: 231; 39.8% identity (70.4% similar) in 98 aa overlap (4-97:5-102)
10 20 30 40 50
pF1KE5 MKWMVVVLVCLQLLEA--AVVKVPLKKFKSIRETMKEKGLLGEFLRTHKYDPAWKYRFG
....:: :.: :: .. .:::.. :... .. .. :.:: ..:. : .
CCDS73 MKTLLLLLLVLLELGEAQGSLHRVPLRRHPSLKKKLRARSQLSEFWKSHNLDMIQFTESC
10 20 30 40 50 60
60 70 80 90 100
pF1KE5 DLSVTY-EPMA-YMDAAYFGEISIGTPPQNFLVLFDTGSSPLPLDPAPS
... . ::. :.: ::: ::::.::::: :.:::::: :
CCDS73 SMDQSAKEPLINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRF
70 80 90 100 110 120
CCDS73 QPSQSSTYSQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAE
130 140 150 160 170 180
>>CCDS73013.1 CTSE gene_id:1510|Hs108|chr1 (396 aa)
initn: 212 init1: 138 opt: 231 Z-score: 325.2 bits: 67.1 E(32554): 8.6e-12
Smith-Waterman score: 231; 39.8% identity (70.4% similar) in 98 aa overlap (4-97:5-102)
10 20 30 40 50
pF1KE5 MKWMVVVLVCLQLLEA--AVVKVPLKKFKSIRETMKEKGLLGEFLRTHKYDPAWKYRFG
....:: :.: :: .. .:::.. :... .. .. :.:: ..:. : .
CCDS73 MKTLLLLLLVLLELGEAQGSLHRVPLRRHPSLKKKLRARSQLSEFWKSHNLDMIQFTESC
10 20 30 40 50 60
60 70 80 90 100
pF1KE5 DLSVTY-EPMA-YMDAAYFGEISIGTPPQNFLVLFDTGSSPLPLDPAPS
... . ::. :.: ::: ::::.::::: :.:::::: :
CCDS73 SMDQSAKEPLINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRF
70 80 90 100 110 120
CCDS73 QPSQSSTYSQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAE
130 140 150 160 170 180
>>CCDS7725.1 CTSD gene_id:1509|Hs108|chr11 (412 aa)
initn: 229 init1: 156 opt: 229 Z-score: 322.1 bits: 66.6 E(32554): 1.3e-11
Smith-Waterman score: 229; 48.4% identity (63.2% similar) in 95 aa overlap (9-97:11-103)
10 20 30 40 50
pF1KE5 MKWMVVVLVCLQLLEA-AVVKVPLKKFKSIRETMKEKGLLGEFLRTHKYDPAWKYRFG
.:: : :.:..::.:: :::.::.: : : :. :: .
CCDS77 MQPSSLLPLALCLLAAPASALVRIPLHKFTSIRRTMSEVG--GSVEDLIAKGPVSKYSQA
10 20 30 40 50
60 70 80 90 100
pF1KE5 DLSVTYEPMA-----YMDAAYFGEISIGTPPQNFLVLFDTGSSPLPLDPAPS
.:: :. :::: :.:::.:::::: : :.:::::: :
CCDS77 VPAVTEGPIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACW
60 70 80 90 100 110
CCDS77 IHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCQSASSASALGGVKVERQV
120 130 140 150 160 170
104 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 21:47:30 2016 done: Mon Nov 7 21:47:31 2016
Total Scan time: 1.310 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]