Result of FASTA (omim) for
pFN21AE5141
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5141, 109 aa
1>>>pF1KE5141 109 - 109 aa - 109 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3017+/-0.000286; mu= 15.6566+/- 0.018
mean_var=95.4630+/-24.402, 0's: 0 Z-trim(118.4): 139 B-trim: 1851 in 1/53
Lambda= 0.131267
statistics sampled from 31030 (31364) to 31030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.368), width: 16
Scan time: 3.710
The best scores are: opt bits E(85289)
NP_112487 (OMIM: 610211) SRA stem-loop-interacting ( 109) 738 148.8 1.6e-36
NP_001254792 (OMIM: 610211) SRA stem-loop-interact ( 107) 712 143.9 4.9e-35
NP_001254793 (OMIM: 610211) SRA stem-loop-interact ( 92) 594 121.4 2.4e-28
NP_001003810 (OMIM: 601324) heterogeneous nuclear ( 287) 181 43.9 0.00016
NP_002129 (OMIM: 601324) heterogeneous nuclear rib ( 306) 181 44.0 0.00017
NP_112737 (OMIM: 601324) heterogeneous nuclear rib ( 336) 181 44.0 0.00018
NP_112738 (OMIM: 601324) heterogeneous nuclear rib ( 355) 181 44.0 0.00018
NP_004490 (OMIM: 602688) heterogeneous nuclear rib ( 285) 168 41.4 0.00089
NP_112556 (OMIM: 602688) heterogeneous nuclear rib ( 332) 168 41.5 0.00096
XP_016867879 (OMIM: 612074,612079) PREDICTED: RNA- ( 684) 171 42.6 0.00098
NP_060547 (OMIM: 612074,612079) RNA-binding protei ( 759) 171 42.6 0.001
XP_011526212 (OMIM: 607430) PREDICTED: DAZ-associa ( 366) 158 39.7 0.0038
NP_733829 (OMIM: 607430) DAZ-associated protein 1 ( 378) 158 39.7 0.0039
XP_016882070 (OMIM: 607430) PREDICTED: DAZ-associa ( 406) 158 39.8 0.004
XP_005259588 (OMIM: 607430) PREDICTED: DAZ-associa ( 406) 158 39.8 0.004
NP_061832 (OMIM: 607430) DAZ-associated protein 1 ( 407) 158 39.8 0.004
XP_016856352 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 158 39.8 0.0041
XP_016856356 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 158 39.8 0.0041
XP_016856357 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 158 39.8 0.0041
XP_016856354 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 158 39.8 0.0041
NP_031401 (OMIM: 605078,612069) TAR DNA-binding pr ( 414) 158 39.8 0.0041
XP_016856355 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 158 39.8 0.0041
XP_016856353 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 158 39.8 0.0041
XP_011526211 (OMIM: 607430) PREDICTED: DAZ-associa ( 521) 158 39.9 0.0046
XP_011526210 (OMIM: 607430) PREDICTED: DAZ-associa ( 521) 158 39.9 0.0046
XP_011526209 (OMIM: 607430) PREDICTED: DAZ-associa ( 548) 158 40.0 0.0048
XP_011526208 (OMIM: 607430) PREDICTED: DAZ-associa ( 549) 158 40.0 0.0048
XP_011526207 (OMIM: 607430) PREDICTED: DAZ-associa ( 549) 158 40.0 0.0048
XP_011526206 (OMIM: 607430) PREDICTED: DAZ-associa ( 550) 158 40.0 0.0048
>>NP_112487 (OMIM: 610211) SRA stem-loop-interacting RNA (109 aa)
initn: 738 init1: 738 opt: 738 Z-score: 776.5 bits: 148.8 E(85289): 1.6e-36
Smith-Waterman score: 738; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109)
10 20 30 40 50 60
pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
10 20 30 40 50 60
70 80 90 100
pF1KE5 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
70 80 90 100
>>NP_001254792 (OMIM: 610211) SRA stem-loop-interacting (107 aa)
initn: 600 init1: 600 opt: 712 Z-score: 749.9 bits: 143.9 E(85289): 4.9e-35
Smith-Waterman score: 712; 98.2% identity (98.2% similar) in 109 aa overlap (1-109:1-107)
10 20 30 40 50 60
pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
10 20 30 40 50 60
70 80 90 100
pF1KE5 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
::::::::::::::::::::::::::::: ::::::::::::::::::
NP_001 GLGWVQFSSEEGLRNALQQENHIIDGVKV--HTRRPKLPQTSDDEKKDF
70 80 90 100
>>NP_001254793 (OMIM: 610211) SRA stem-loop-interacting (92 aa)
initn: 594 init1: 594 opt: 594 Z-score: 629.8 bits: 121.4 E(85289): 2.4e-28
Smith-Waterman score: 594; 100.0% identity (100.0% similar) in 88 aa overlap (1-88:1-88)
10 20 30 40 50 60
pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
10 20 30 40 50 60
70 80 90 100
pF1KE5 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
::::::::::::::::::::::::::::
NP_001 GLGWVQFSSEEGLRNALQQENHIIDGVKCLFF
70 80 90
>>NP_001003810 (OMIM: 601324) heterogeneous nuclear ribo (287 aa)
initn: 256 init1: 140 opt: 181 Z-score: 202.1 bits: 43.9 E(85289): 0.00016
Smith-Waterman score: 181; 34.1% identity (69.3% similar) in 88 aa overlap (22-109:81-166)
10 20 30 40 50
pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP
:. . : .....::..:..::.: : :
NP_001 TASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLK
60 70 80 90 100 110
60 70 80 90 100
pF1KE5 FDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
.: :: ::.:.: :. :.. ....:..: ..: :: . .: : .:.. :: :
NP_001 LDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG-KV-IDPKRAKAMKTKEPVKKIFVG
120 130 140 150 160
NP_001 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV
170 180 190 200 210 220
>>NP_002129 (OMIM: 601324) heterogeneous nuclear ribonuc (306 aa)
initn: 256 init1: 140 opt: 181 Z-score: 201.8 bits: 44.0 E(85289): 0.00017
Smith-Waterman score: 181; 34.1% identity (69.3% similar) in 88 aa overlap (22-109:100-185)
10 20 30 40 50
pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP
:. . : .....::..:..::.: : :
NP_002 ASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLK
70 80 90 100 110 120
60 70 80 90 100
pF1KE5 FDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
.: :: ::.:.: :. :.. ....:..: ..: :: . .: : .:.. :: :
NP_002 LDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG-KV-IDPKRAKAMKTKEPVKKIFVG
130 140 150 160 170 180
NP_002 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV
190 200 210 220 230 240
>>NP_112737 (OMIM: 601324) heterogeneous nuclear ribonuc (336 aa)
initn: 256 init1: 140 opt: 181 Z-score: 201.4 bits: 44.0 E(85289): 0.00018
Smith-Waterman score: 181; 34.1% identity (69.3% similar) in 88 aa overlap (22-109:81-166)
10 20 30 40 50
pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP
:. . : .....::..:..::.: : :
NP_112 TASGGTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLK
60 70 80 90 100 110
60 70 80 90 100
pF1KE5 FDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
.: :: ::.:.: :. :.. ....:..: ..: :: . .: : .:.. :: :
NP_112 LDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG-KV-IDPKRAKAMKTKEPVKKIFVG
120 130 140 150 160
NP_112 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV
170 180 190 200 210 220
>>NP_112738 (OMIM: 601324) heterogeneous nuclear ribonuc (355 aa)
initn: 256 init1: 140 opt: 181 Z-score: 201.2 bits: 44.0 E(85289): 0.00018
Smith-Waterman score: 181; 34.1% identity (69.3% similar) in 88 aa overlap (22-109:100-185)
10 20 30 40 50
pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP
:. . : .....::..:..::.: : :
NP_112 ASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLK
70 80 90 100 110 120
60 70 80 90 100
pF1KE5 FDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
.: :: ::.:.: :. :.. ....:..: ..: :: . .: : .:.. :: :
NP_112 LDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNG-KV-IDPKRAKAMKTKEPVKKIFVG
130 140 150 160 170 180
NP_112 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV
190 200 210 220 230 240
>>NP_004490 (OMIM: 602688) heterogeneous nuclear ribonuc (285 aa)
initn: 188 init1: 164 opt: 168 Z-score: 188.8 bits: 41.4 E(85289): 0.00089
Smith-Waterman score: 168; 30.7% identity (68.2% similar) in 88 aa overlap (22-109:73-157)
10 20 30 40 50
pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP
:: . : .....::..:..::.: : .
NP_004 ATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIK
50 60 70 80 90 100
60 70 80 90 100
pF1KE5 FDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
.: .:: ::.:.. :.. .....:.:..: .:: .: . . . .: :: :
NP_004 MDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDG---RVIDPKKAMAMKKDPVKKIFVG
110 120 130 140 150
NP_004 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTV
160 170 180 190 200 210
>>NP_112556 (OMIM: 602688) heterogeneous nuclear ribonuc (332 aa)
initn: 188 init1: 164 opt: 168 Z-score: 188.2 bits: 41.5 E(85289): 0.00096
Smith-Waterman score: 168; 30.7% identity (68.2% similar) in 88 aa overlap (22-109:73-157)
10 20 30 40 50
pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILP
:: . : .....::..:..::.: : .
NP_112 ATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIK
50 60 70 80 90 100
60 70 80 90 100
pF1KE5 FDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
.: .:: ::.:.. :.. .....:.:..: .:: .: . . . .: :: :
NP_112 MDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDG---RVIDPKKAMAMKKDPVKKIFVG
110 120 130 140 150
NP_112 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTV
160 170 180 190 200 210
>>XP_016867879 (OMIM: 612074,612079) PREDICTED: RNA-bind (684 aa)
initn: 188 init1: 146 opt: 171 Z-score: 188.1 bits: 42.6 E(85289): 0.00098
Smith-Waterman score: 171; 35.6% identity (65.5% similar) in 87 aa overlap (22-108:7-92)
10 20 30 40 50 60
pF1KE5 MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHR
:: :.: .: : ::.: :.: : :..:.. .: . :
XP_016 MAGLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACR
10 20 30 40
70 80 90 100
pF1KE5 GLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTSDDEKKDF
:.:.: :: : .. ::. : ..: :..: . . :: . . .. :.
XP_016 GFGYVTFSMLEDVQRALK-EITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKA
50 60 70 80 90 100
XP_016 KKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNL
110 120 130 140 150 160
109 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 21:47:03 2016 done: Mon Nov 7 21:47:03 2016
Total Scan time: 3.710 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]