FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5138, 125 aa
  1>>>pF1KE5138 125 - 125 aa - 125 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7084+/-0.000322; mu= 13.4388+/- 0.020
 mean_var=52.5145+/-10.721, 0's: 0 Z-trim(114.2): 13  B-trim: 0 in 0/54
 Lambda= 0.176984
 statistics sampled from 23920 (23924) to 23920 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.281), width:  16
 Scan time:  4.180

The best scores are:                                      opt bits E(85289)
NP_115865 (OMIM: 611973) 28S ribosomal protein S6, ( 125)  806 213.2 9.1e-56


>>NP_115865 (OMIM: 611973) 28S ribosomal protein S6, mit  (125 aa)
 initn: 806 init1: 806 opt: 806  Z-score: 1122.2  bits: 213.2 E(85289): 9.1e-56
Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KE5 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKECEGIVPVPLAEKLYST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 GGYFLVDFYAPTAAVESMVEHLSRDIDVIRGNIVKHPLTQELKECEGIVPVPLAEKLYST
               70        80        90       100       110       120

            
pF1KE5 KKRKK
       :::::
NP_115 KKRKK
            




125 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:44:03 2016 done: Mon Nov  7 21:44:04 2016
 Total Scan time:  4.180 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]