FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5135, 108 aa
  1>>>pF1KE5135 108 - 108 aa - 108 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0923+/-0.000313; mu= 11.1927+/- 0.019
 mean_var=74.1236+/-14.256, 0's: 0 Z-trim(118.3): 22  B-trim: 53 in 1/49
 Lambda= 0.148969
 statistics sampled from 31141 (31163) to 31141 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.365), width:  16
 Scan time:  4.090

The best scores are:                                      opt bits E(85289)
NP_065148 (OMIM: 125853,605565) resistin precursor ( 108)  759 171.4 2.5e-43
NP_001180303 (OMIM: 125853,605565) resistin precur ( 108)  759 171.4 2.5e-43
NP_115968 (OMIM: 605645) resistin-like beta precur ( 111)  379 89.7   1e-18


>>NP_065148 (OMIM: 125853,605565) resistin precursor [Ho  (108 aa)
 initn: 759 init1: 759 opt: 759  Z-score: 898.7  bits: 171.4 E(85289): 2.5e-43
Smith-Waterman score: 759; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)

               10        20        30        40        50        60
pF1KE5 MKALCLLLLPVLGLLVSSKTLCSMEEAINERIQEVAGSLIFRAISSIGLECQSVTSRGDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MKALCLLLLPVLGLLVSSKTLCSMEEAINERIQEVAGSLIFRAISSIGLECQSVTSRGDL
               10        20        30        40        50        60

               70        80        90       100        
pF1KE5 ATCPRGFAVTGCTCGSACGSWDVRAETTCHCQCAGMDWTGARCCRVQP
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 ATCPRGFAVTGCTCGSACGSWDVRAETTCHCQCAGMDWTGARCCRVQP
               70        80        90       100        

>>NP_001180303 (OMIM: 125853,605565) resistin precursor   (108 aa)
 initn: 759 init1: 759 opt: 759  Z-score: 898.7  bits: 171.4 E(85289): 2.5e-43
Smith-Waterman score: 759; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)

               10        20        30        40        50        60
pF1KE5 MKALCLLLLPVLGLLVSSKTLCSMEEAINERIQEVAGSLIFRAISSIGLECQSVTSRGDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKALCLLLLPVLGLLVSSKTLCSMEEAINERIQEVAGSLIFRAISSIGLECQSVTSRGDL
               10        20        30        40        50        60

               70        80        90       100        
pF1KE5 ATCPRGFAVTGCTCGSACGSWDVRAETTCHCQCAGMDWTGARCCRVQP
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATCPRGFAVTGCTCGSACGSWDVRAETTCHCQCAGMDWTGARCCRVQP
               70        80        90       100        

>>NP_115968 (OMIM: 605645) resistin-like beta precursor   (111 aa)
 initn: 399 init1: 292 opt: 379  Z-score: 457.2  bits: 89.7 E(85289): 1e-18
Smith-Waterman score: 379; 49.0% identity (76.0% similar) in 104 aa overlap (4-106:7-110)

                  10        20        30        40         50      
pF1KE5    MKALCLLLLPVLGLLVSSKTLCSMEEAINERIQEVAGSLIFRAIS-SIGLECQSVTS
             : :.:.:.: :.  ..: ::.. .....:..: .:: .     :  : : :: :
NP_115 MGPSSCLLLILIPLLQLINPGSTQCSLDSVMDKKIKDVLNSLEYSPSPISKKLSCASVKS
               10        20        30        40        50        60

         60        70        80        90       100        
pF1KE5 RGDLATCPRGFAVTGCTCGSACGSWDVRAETTCHCQCAGMDWTGARCCRVQP
       .:  ..:: :.:::::.:: .::::::. ::::::::. .::: ::::..  
NP_115 QGRPSSCPAGMAVTGCACGYGCGSWDVQLETTCHCQCSVVDWTTARCCHLT 
               70        80        90       100       110  




108 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:42:35 2016 done: Mon Nov  7 21:42:36 2016
 Total Scan time:  4.090 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]