FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5134, 165 aa
  1>>>pF1KE5134 165 - 165 aa - 165 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0415+/-0.000731; mu= 9.5708+/- 0.044
 mean_var=80.3028+/-16.069, 0's: 0 Z-trim(110.9): 8  B-trim: 274 in 1/50
 Lambda= 0.143123
 statistics sampled from 11964 (11967) to 11964 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.368), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS8124.1 EIF1AD gene_id:84285|Hs108|chr11        ( 165) 1083 232.3 1.1e-61


>>CCDS8124.1 EIF1AD gene_id:84285|Hs108|chr11             (165 aa)
 initn: 1083 init1: 1083 opt: 1083  Z-score: 1221.2  bits: 232.3 E(32554): 1.1e-61
Smith-Waterman score: 1083; 99.4% identity (100.0% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KE5 MSQATKRKHVVKEVLGEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS81 MSQATKRKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 IWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQT
               70        80        90       100       110       120

              130       140       150       160     
pF1KE5 QPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEEAA
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QPELPAEPQLSGEESSSEDDSDLFVNTNRRQYHESEEESEEEEAA
              130       140       150       160     




165 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:42:03 2016 done: Mon Nov  7 21:42:03 2016
 Total Scan time:  1.950 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]