Result of FASTA (omim) for
pFN21AE5133
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5133, 166 aa
1>>>pF1KE5133 166 - 166 aa - 166 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6923+/-0.000269; mu= 12.0027+/- 0.017
mean_var=91.7804+/-17.976, 0's: 0 Z-trim(120.7): 43 B-trim: 0 in 0/54
Lambda= 0.133875
statistics sampled from 36269 (36312) to 36269 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.426), width: 16
Scan time: 5.960
The best scores are: opt bits E(85289)
NP_689482 (OMIM: 613541,613559) probable peptide c ( 166) 1108 222.9 1.9e-58
XP_011537282 (OMIM: 613541,613559) PREDICTED: prob ( 166) 1108 222.9 1.9e-58
NP_001137377 (OMIM: 613541,613559) probable peptid ( 166) 1108 222.9 1.9e-58
XP_005253687 (OMIM: 613541,613559) PREDICTED: prob ( 166) 1108 222.9 1.9e-58
NP_001181924 (OMIM: 613541,613559) probable peptid ( 166) 1108 222.9 1.9e-58
XP_016876365 (OMIM: 604601) PREDICTED: peptide cha ( 281) 178 43.4 0.00033
XP_016876366 (OMIM: 604601) PREDICTED: peptide cha ( 281) 178 43.4 0.00033
XP_016876360 (OMIM: 604601) PREDICTED: peptide cha ( 444) 178 43.6 0.00047
XP_016876359 (OMIM: 604601) PREDICTED: peptide cha ( 444) 178 43.6 0.00047
XP_005266656 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_016876364 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_016876363 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_006719960 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_016876357 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_006719961 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_016876358 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
NP_004285 (OMIM: 604601) peptide chain release fac ( 445) 178 43.6 0.00047
XP_016876352 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_011533627 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_011533623 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_016876362 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_011533622 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_016876351 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_006719963 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_016876355 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_011533620 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_016876354 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_016876356 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_011533625 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_016876353 (OMIM: 604601) PREDICTED: peptide cha ( 445) 178 43.6 0.00047
XP_016876350 (OMIM: 604601) PREDICTED: peptide cha ( 457) 178 43.6 0.00048
XP_011533619 (OMIM: 604601) PREDICTED: peptide cha ( 458) 178 43.6 0.00049
XP_016876349 (OMIM: 604601) PREDICTED: peptide cha ( 458) 178 43.6 0.00049
XP_016876348 (OMIM: 604601) PREDICTED: peptide cha ( 496) 178 43.6 0.00052
XP_016876347 (OMIM: 604601) PREDICTED: peptide cha ( 497) 178 43.6 0.00052
XP_016876345 (OMIM: 604601) PREDICTED: peptide cha ( 497) 178 43.6 0.00052
XP_011533617 (OMIM: 604601) PREDICTED: peptide cha ( 497) 178 43.6 0.00052
XP_016876346 (OMIM: 604601) PREDICTED: peptide cha ( 497) 178 43.6 0.00052
>>NP_689482 (OMIM: 613541,613559) probable peptide chain (166 aa)
initn: 1108 init1: 1108 opt: 1108 Z-score: 1170.3 bits: 222.9 E(85289): 1.9e-58
Smith-Waterman score: 1108; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
pF1KE5 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
70 80 90 100 110 120
130 140 150 160
pF1KE5 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
::::::::::::::::::::::::::::::::::::::::::::::
NP_689 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
130 140 150 160
>>XP_011537282 (OMIM: 613541,613559) PREDICTED: probable (166 aa)
initn: 1108 init1: 1108 opt: 1108 Z-score: 1170.3 bits: 222.9 E(85289): 1.9e-58
Smith-Waterman score: 1108; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
pF1KE5 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
70 80 90 100 110 120
130 140 150 160
pF1KE5 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
130 140 150 160
>>NP_001137377 (OMIM: 613541,613559) probable peptide ch (166 aa)
initn: 1108 init1: 1108 opt: 1108 Z-score: 1170.3 bits: 222.9 E(85289): 1.9e-58
Smith-Waterman score: 1108; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
pF1KE5 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
70 80 90 100 110 120
130 140 150 160
pF1KE5 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
130 140 150 160
>>XP_005253687 (OMIM: 613541,613559) PREDICTED: probable (166 aa)
initn: 1108 init1: 1108 opt: 1108 Z-score: 1170.3 bits: 222.9 E(85289): 1.9e-58
Smith-Waterman score: 1108; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
pF1KE5 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
70 80 90 100 110 120
130 140 150 160
pF1KE5 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
130 140 150 160
>>NP_001181924 (OMIM: 613541,613559) probable peptide ch (166 aa)
initn: 1108 init1: 1108 opt: 1108 Z-score: 1170.3 bits: 222.9 E(85289): 1.9e-58
Smith-Waterman score: 1108; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
pF1KE5 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
70 80 90 100 110 120
130 140 150 160
pF1KE5 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
130 140 150 160
>>XP_016876365 (OMIM: 604601) PREDICTED: peptide chain r (281 aa)
initn: 146 init1: 146 opt: 178 Z-score: 196.4 bits: 43.4 E(85289): 0.00033
Smith-Waterman score: 178; 30.8% identity (69.2% similar) in 107 aa overlap (53-157:129-229)
30 40 50 60 70 80
pF1KE5 LRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENELEEQFVKGHGPGGQATNKTSNCV
..:: ..:. . ...: ::: .:::.. :
XP_016 IPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAV
100 110 120 130 140 150
90 100 110 120 130 140
pF1KE5 VLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKRE--AAKKKQE
: :::.:.::.:.: :: .:...: ..:. .. :. . ..:.::. .:.: :
XP_016 RLVHIPTGLVVECQQERSQIKNKEIAFRVLRARL---YQ---QIIEKDKRQQQSARKLQV
160 170 180 190 200 210
150 160
pF1KE5 RKKRAKETLEKKKLLKELWESSKKVH
. .: .. .. ..
XP_016 GTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAIAEL
220 230 240 250 260 270
>>XP_016876366 (OMIM: 604601) PREDICTED: peptide chain r (281 aa)
initn: 146 init1: 146 opt: 178 Z-score: 196.4 bits: 43.4 E(85289): 0.00033
Smith-Waterman score: 178; 30.8% identity (69.2% similar) in 107 aa overlap (53-157:129-229)
30 40 50 60 70 80
pF1KE5 LRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENELEEQFVKGHGPGGQATNKTSNCV
..:: ..:. . ...: ::: .:::.. :
XP_016 IPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAV
100 110 120 130 140 150
90 100 110 120 130 140
pF1KE5 VLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKRE--AAKKKQE
: :::.:.::.:.: :: .:...: ..:. .. :. . ..:.::. .:.: :
XP_016 RLVHIPTGLVVECQQERSQIKNKEIAFRVLRARL---YQ---QIIEKDKRQQQSARKLQV
160 170 180 190 200 210
150 160
pF1KE5 RKKRAKETLEKKKLLKELWESSKKVH
. .: .. .. ..
XP_016 GTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAIAEL
220 230 240 250 260 270
>>XP_016876360 (OMIM: 604601) PREDICTED: peptide chain r (444 aa)
initn: 146 init1: 146 opt: 178 Z-score: 193.7 bits: 43.6 E(85289): 0.00047
Smith-Waterman score: 178; 30.8% identity (69.2% similar) in 107 aa overlap (53-157:293-393)
30 40 50 60 70 80
pF1KE5 LRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENELEEQFVKGHGPGGQATNKTSNCV
..:: ..:. . ...: ::: .:::.. :
XP_016 IPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAV
270 280 290 300 310 320
90 100 110 120 130 140
pF1KE5 VLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKRE--AAKKKQE
: :::.:.::.:.: :: .:...: ..:. .. :. . ..:.::. .:.: :
XP_016 RLVHIPTGLVVECQQERSQIKNKEIAFRVLRARL---YQ---QIIEKDKRQQQSARKLQV
330 340 350 360 370
150 160
pF1KE5 RKKRAKETLEKKKLLKELWESSKKVH
. .: .. .. ..
XP_016 GTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKAQSHSTGGSRDPAHSTFLSLDSVRSPGI
380 390 400 410 420 430
>>XP_016876359 (OMIM: 604601) PREDICTED: peptide chain r (444 aa)
initn: 146 init1: 146 opt: 178 Z-score: 193.7 bits: 43.6 E(85289): 0.00047
Smith-Waterman score: 178; 30.8% identity (69.2% similar) in 107 aa overlap (53-157:293-393)
30 40 50 60 70 80
pF1KE5 LRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENELEEQFVKGHGPGGQATNKTSNCV
..:: ..:. . ...: ::: .:::.. :
XP_016 IPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAV
270 280 290 300 310 320
90 100 110 120 130 140
pF1KE5 VLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKRE--AAKKKQE
: :::.:.::.:.: :: .:...: ..:. .. :. . ..:.::. .:.: :
XP_016 RLVHIPTGLVVECQQERSQIKNKEIAFRVLRARL---YQ---QIIEKDKRQQQSARKLQV
330 340 350 360 370
150 160
pF1KE5 RKKRAKETLEKKKLLKELWESSKKVH
. .: .. .. ..
XP_016 GTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKAQSHSTGGSRDPAHSTFLSLDSVRSPGI
380 390 400 410 420 430
>>XP_005266656 (OMIM: 604601) PREDICTED: peptide chain r (445 aa)
initn: 146 init1: 146 opt: 178 Z-score: 193.7 bits: 43.6 E(85289): 0.00047
Smith-Waterman score: 178; 30.8% identity (69.2% similar) in 107 aa overlap (53-157:293-393)
30 40 50 60 70 80
pF1KE5 LRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENELEEQFVKGHGPGGQATNKTSNCV
..:: ..:. . ...: ::: .:::.. :
XP_005 IPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAV
270 280 290 300 310 320
90 100 110 120 130 140
pF1KE5 VLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFYNGENSPVHKEKRE--AAKKKQE
: :::.:.::.:.: :: .:...: ..:. .. :. . ..:.::. .:.: :
XP_005 RLVHIPTGLVVECQQERSQIKNKEIAFRVLRARL---YQ---QIIEKDKRQQQSARKLQV
330 340 350 360 370
150 160
pF1KE5 RKKRAKETLEKKKLLKELWESSKKVH
. .: .. .. ..
XP_005 GTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAIAEL
380 390 400 410 420 430
166 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 21:41:30 2016 done: Mon Nov 7 21:41:31 2016
Total Scan time: 5.960 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]