FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5132, 110 aa
  1>>>pF1KE5132 110 - 110 aa - 110 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7967+/-0.000253; mu= 9.0662+/- 0.016
 mean_var=86.2134+/-17.174, 0's: 0 Z-trim(122.9): 3  B-trim: 2286 in 1/54
 Lambda= 0.138130
 statistics sampled from 41862 (41865) to 41862 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.491), width:  16
 Scan time:  4.600

The best scores are:                                      opt bits E(85289)
NP_444513 (OMIM: 606634) dermcidin isoform 1 prepr ( 110)  717 151.1 3.4e-37
NP_001287783 (OMIM: 606634) dermcidin isoform 2 pr ( 121)  637 135.2 2.3e-32


>>NP_444513 (OMIM: 606634) dermcidin isoform 1 prepropro  (110 aa)
 initn: 717 init1: 717 opt: 717  Z-score: 788.6  bits: 151.1 E(85289): 3.4e-37
Smith-Waterman score: 717; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)

               10        20        30        40        50        60
pF1KE5 MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK
               10        20        30        40        50        60

               70        80        90       100       110
pF1KE5 QRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGAVHDVKDVLDSVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 QRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGAVHDVKDVLDSVL
               70        80        90       100       110

>>NP_001287783 (OMIM: 606634) dermcidin isoform 2 prepro  (121 aa)
 initn: 637 init1: 637 opt: 637  Z-score: 701.9  bits: 135.2 E(85289): 2.3e-32
Smith-Waterman score: 637; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE5 MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE5 QRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGAVHDVKDVLDSVL          
       :::::::::::::::::::::::::::::::::::::                       
NP_001 QRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGGEERLVFGAPVNLTSIPLTSVSR
               70        80        90       100       110       120

NP_001 P
        




110 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:40:57 2016 done: Mon Nov  7 21:40:58 2016
 Total Scan time:  4.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]