FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5132, 110 aa
  1>>>pF1KE5132 110 - 110 aa - 110 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6134+/-0.000553; mu= 10.4675+/- 0.034
 mean_var=86.6022+/-17.154, 0's: 0 Z-trim(116.0): 4  B-trim: 291 in 1/50
 Lambda= 0.137819
 statistics sampled from 16578 (16582) to 16578 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.509), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS8884.1 DCD gene_id:117159|Hs108|chr12          ( 110)  717 150.6 1.8e-37
CCDS73478.1 DCD gene_id:117159|Hs108|chr12         ( 121)  637 134.7 1.2e-32


>>CCDS8884.1 DCD gene_id:117159|Hs108|chr12               (110 aa)
 initn: 717 init1: 717 opt: 717  Z-score: 786.1  bits: 150.6 E(32554): 1.8e-37
Smith-Waterman score: 717; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)

               10        20        30        40        50        60
pF1KE5 MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK
               10        20        30        40        50        60

               70        80        90       100       110
pF1KE5 QRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGAVHDVKDVLDSVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 QRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGAVHDVKDVLDSVL
               70        80        90       100       110

>>CCDS73478.1 DCD gene_id:117159|Hs108|chr12              (121 aa)
 initn: 637 init1: 637 opt: 637  Z-score: 699.6  bits: 134.7 E(32554): 1.2e-32
Smith-Waterman score: 637; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE5 MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE5 QRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGAVHDVKDVLDSVL          
       :::::::::::::::::::::::::::::::::::::                       
CCDS73 QRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGGEERLVFGAPVNLTSIPLTSVSR
               70        80        90       100       110       120

CCDS73 P
        




110 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:40:57 2016 done: Mon Nov  7 21:40:57 2016
 Total Scan time:  1.830 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]