FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5131, 140 aa
  1>>>pF1KE5131 140 - 140 aa - 140 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4104+/-0.000659; mu= 10.7624+/- 0.040
 mean_var=62.4793+/-12.467, 0's: 0 Z-trim(110.3): 5  B-trim: 5 in 1/51
 Lambda= 0.162258
 statistics sampled from 11524 (11527) to 11524 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.354), width:  16
 Scan time:  1.570

The best scores are:                                      opt bits E(32554)
CCDS33156.1 PTRHD1 gene_id:391356|Hs108|chr2       ( 140)  937 227.2 2.7e-60


>>CCDS33156.1 PTRHD1 gene_id:391356|Hs108|chr2            (140 aa)
 initn: 937 init1: 937 opt: 937  Z-score: 1196.1  bits: 227.2 E(32554): 2.7e-60
Smith-Waterman score: 937; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KE5 MHRGVGPAFRVVRKMAASGAEPQVLVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MHRGVGPAFRVVRKMAASGAEPQVLVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 THRDHPHTAAYLQELGRMRKVVLEAPDETTLKELAETLQQKNIDHMLWLEQPENIATCIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 THRDHPHTAAYLQELGRMRKVVLEAPDETTLKELAETLQQKNIDHMLWLEQPENIATCIA
               70        80        90       100       110       120

              130       140
pF1KE5 LRPYPKEEVGQYLKKFRLFK
       ::::::::::::::::::::
CCDS33 LRPYPKEEVGQYLKKFRLFK
              130       140




140 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:40:25 2016 done: Mon Nov  7 21:40:25 2016
 Total Scan time:  1.570 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]