FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5128, 128 aa
  1>>>pF1KE5128 128 - 128 aa - 128 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4097+/-0.000717; mu= 9.6030+/- 0.043
 mean_var=53.2279+/-10.566, 0's: 0 Z-trim(107.8): 15  B-trim: 365 in 1/49
 Lambda= 0.175794
 statistics sampled from 9809 (9821) to 9809 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.302), width:  16
 Scan time:  1.230

The best scores are:                                      opt bits E(32554)
CCDS14022.1 SNU13 gene_id:4809|Hs108|chr22         ( 128)  821 215.7 6.3e-57
CCDS33653.1 SNU13 gene_id:4809|Hs108|chr22         ( 128)  821 215.7 6.3e-57
CCDS4432.1 NHP2 gene_id:55651|Hs108|chr5           ( 153)  312 86.6 5.4e-18


>>CCDS14022.1 SNU13 gene_id:4809|Hs108|chr22              (128 aa)
 initn: 821 init1: 821 opt: 821  Z-score: 1135.5  bits: 215.7 E(32554): 6.3e-57
Smith-Waterman score: 821; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KE5 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ
               70        80        90       100       110       120

               
pF1KE5 QSIERLLV
       ::::::::
CCDS14 QSIERLLV
               

>>CCDS33653.1 SNU13 gene_id:4809|Hs108|chr22              (128 aa)
 initn: 821 init1: 821 opt: 821  Z-score: 1135.5  bits: 215.7 E(32554): 6.3e-57
Smith-Waterman score: 821; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KE5 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ
               70        80        90       100       110       120

               
pF1KE5 QSIERLLV
       ::::::::
CCDS33 QSIERLLV
               

>>CCDS4432.1 NHP2 gene_id:55651|Hs108|chr5                (153 aa)
 initn: 297 init1: 297 opt: 312  Z-score: 436.5  bits: 86.6 E(32554): 5.4e-18
Smith-Waterman score: 312; 36.7% identity (70.0% similar) in 120 aa overlap (7-126:32-149)

                                       10        20        30      
pF1KE5                         MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR
                                     :: : :::. .::.::   .... . ::.:
CCDS44 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR
              10        20        30        40        50        60 

         40        50        60        70        80        90      
pF1KE5 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS
       .:..:. : .:.: . ..:.:.:. :.:.  :::..:::.:.:::.. ::  :: : : .
CCDS44 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK
              70        80        90       100       110       120 

        100       110       120          
pF1KE5 RPVIACSVTIKEGSQLKQQIQSIQQSIERLLV  
       ::.  : . .:   . ..  .   . .. :    
CCDS44 RPT--CVIMVKPHEEYQEAYDECLEEVQSLPLPL
               130       140       150   




128 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:39:23 2016 done: Mon Nov  7 21:39:24 2016
 Total Scan time:  1.230 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]