FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5127, 118 aa
  1>>>pF1KE5127 118 - 118 aa - 118 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2914+/-0.000324; mu= 9.5454+/- 0.020
 mean_var=51.1404+/-10.215, 0's: 0 Z-trim(114.7): 27  B-trim: 551 in 1/52
 Lambda= 0.179346
 statistics sampled from 24632 (24656) to 24632 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.289), width:  16
 Scan time:  4.470

The best scores are:                                      opt bits E(85289)
NP_001077861 (OMIM: 602750) D-dopachrome decarboxy ( 118)  766 205.6 1.5e-53
NP_001346 (OMIM: 602750) D-dopachrome decarboxylas ( 118)  766 205.6 1.5e-53
NP_002406 (OMIM: 153620,604302) macrophage migrati ( 115)  248 71.6 3.3e-13


>>NP_001077861 (OMIM: 602750) D-dopachrome decarboxylase  (118 aa)
 initn: 766 init1: 766 opt: 766  Z-score: 1082.2  bits: 205.6 E(85289): 1.5e-53
Smith-Waterman score: 766; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE5 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE5 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL
               70        80        90       100       110        

>>NP_001346 (OMIM: 602750) D-dopachrome decarboxylase [H  (118 aa)
 initn: 766 init1: 766 opt: 766  Z-score: 1082.2  bits: 205.6 E(85289): 1.5e-53
Smith-Waterman score: 766; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE5 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE5 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL
               70        80        90       100       110        

>>NP_002406 (OMIM: 153620,604302) macrophage migration i  (115 aa)
 initn: 248 init1: 191 opt: 248  Z-score: 358.0  bits: 71.6 E(85289): 3.3e-13
Smith-Waterman score: 248; 36.7% identity (67.0% similar) in 109 aa overlap (1-109:1-108)

               10        20        30        40        50        60
pF1KE5 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
       ::.. ..::.:   :: :. ..:    :.  ::: . . : : :   ::..::.::::  
NP_002 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALC
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE5 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL
       :. ::: .: :. :::.:  .  .:...: .. ::. : .. ... ..:         
NP_002 SLHSIGKIGGAQ-NRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA  
               70         80        90       100       110       




118 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:38:51 2016 done: Mon Nov  7 21:38:52 2016
 Total Scan time:  4.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]