FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5127, 118 aa
  1>>>pF1KE5127 118 - 118 aa - 118 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3751+/-0.000644; mu= 8.9737+/- 0.039
 mean_var=49.4303+/-10.021, 0's: 0 Z-trim(108.7): 11  B-trim: 0 in 0/51
 Lambda= 0.182422
 statistics sampled from 10383 (10388) to 10383 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.319), width:  16
 Scan time:  1.140

The best scores are:                                      opt bits E(32554)
CCDS13820.1 DDT gene_id:1652|Hs108|chr22           ( 118)  766 208.7 6.6e-55
CCDS42988.1 DDTL gene_id:100037417|Hs108|chr22     ( 134)  613 168.5 9.9e-43
CCDS13819.1 MIF gene_id:4282|Hs108|chr22           ( 115)  248 72.4 7.1e-14


>>CCDS13820.1 DDT gene_id:1652|Hs108|chr22                (118 aa)
 initn: 766 init1: 766 opt: 766  Z-score: 1099.2  bits: 208.7 E(32554): 6.6e-55
Smith-Waterman score: 766; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE5 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE5 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL
               70        80        90       100       110        

>>CCDS42988.1 DDTL gene_id:100037417|Hs108|chr22          (134 aa)
 initn: 613 init1: 613 opt: 613  Z-score: 880.6  bits: 168.5 E(32554): 9.9e-43
Smith-Waterman score: 613; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KE5 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE5 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL  
       :::::::::::::::::::::::::::::::::::                         
CCDS42 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRFPTVLSTSPAAHGGPRCPGEIIEGK
               70        80        90       100       110       120

CCDS42 KSCLNEEALFIYFI
              130    

>>CCDS13819.1 MIF gene_id:4282|Hs108|chr22                (115 aa)
 initn: 248 init1: 191 opt: 248  Z-score: 362.6  bits: 72.4 E(32554): 7.1e-14
Smith-Waterman score: 248; 36.7% identity (67.0% similar) in 109 aa overlap (1-109:1-108)

               10        20        30        40        50        60
pF1KE5 MPFLELDTNLPANRVPAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQL
       ::.. ..::.:   :: :. ..:    :.  ::: . . : : :   ::..::.::::  
CCDS13 MPMFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALC
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE5 SISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL
       :. ::: .: :. :::.:  .  .:...: .. ::. : .. ... ..:         
CCDS13 SLHSIGKIGGAQ-NRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA  
               70         80        90       100       110       




118 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:38:50 2016 done: Mon Nov  7 21:38:51 2016
 Total Scan time:  1.140 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]