FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5125, 98 aa
  1>>>pF1KE5125 98 - 98 aa - 98 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8989+/-0.000574; mu= 10.7921+/- 0.035
 mean_var=49.5316+/- 9.689, 0's: 0 Z-trim(110.4): 17  B-trim: 0 in 0/50
 Lambda= 0.182235
 statistics sampled from 11612 (11618) to 11612 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.357), width:  16
 Scan time:  1.120

The best scores are:                                      opt bits E(32554)
CCDS13701.1 CSTB gene_id:1476|Hs108|chr21          (  98)  647 176.9 1.7e-45
CCDS3011.1 CSTA gene_id:1475|Hs108|chr3            (  98)  345 97.5 1.4e-21


>>CCDS13701.1 CSTB gene_id:1476|Hs108|chr21               (98 aa)
 initn: 647 init1: 647 opt: 647  Z-score: 930.1  bits: 176.9 E(32554): 1.7e-45
Smith-Waterman score: 647; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KE5 MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG
               10        20        30        40        50        60

               70        80        90        
pF1KE5 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF
       ::::::::::::::::::::::::::::::::::::::
CCDS13 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF
               70        80        90        

>>CCDS3011.1 CSTA gene_id:1475|Hs108|chr3                 (98 aa)
 initn: 350 init1: 330 opt: 345  Z-score: 501.0  bits: 97.5 E(32554): 1.4e-21
Smith-Waterman score: 345; 53.1% identity (83.7% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KE5 MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG
       :. :. : ..::: : :.:.:.:. ::::: :. .  ..::..:.::::::::.:::..:
CCDS30 MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAG
               10        20        30        40        50        60

               70        80        90        
pF1KE5 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF
       :. ..::.::.::: .:. :.:..::..: : :::: :
CCDS30 DNKYMHLKVFKSLPGQNEDLVLTGYQVDKNKDDELTGF
               70        80        90        




98 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:38:23 2016 done: Mon Nov  7 21:38:23 2016
 Total Scan time:  1.120 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]