Result of FASTA (omim) for
pFN21AE5123
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5123, 153 aa
1>>>pF1KE5123 153 - 153 aa - 153 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3692+/-0.000359; mu= 11.0090+/- 0.022
mean_var=56.1104+/-11.159, 0's: 0 Z-trim(112.7): 9 B-trim: 0 in 0/49
Lambda= 0.171219
statistics sampled from 21698 (21706) to 21698 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.254), width: 16
Scan time: 4.640
The best scores are: opt bits E(85289)
NP_065123 (OMIM: 605782) eukaryotic translation in ( 153) 1027 261.6 3.5e-70
NP_001961 (OMIM: 600187) eukaryotic translation in ( 154) 865 221.6 3.9e-58
XP_005256566 (OMIM: 600187) PREDICTED: eukaryotic ( 154) 865 221.6 3.9e-58
NP_001137233 (OMIM: 600187) eukaryotic translation ( 154) 865 221.6 3.9e-58
NP_001137234 (OMIM: 600187) eukaryotic translation ( 154) 865 221.6 3.9e-58
NP_001137232 (OMIM: 600187) eukaryotic translation ( 184) 865 221.6 4.6e-58
>>NP_065123 (OMIM: 605782) eukaryotic translation initia (153 aa)
initn: 1027 init1: 1027 opt: 1027 Z-score: 1381.0 bits: 261.6 E(85289): 3.5e-70
Smith-Waterman score: 1027; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)
10 20 30 40 50 60
pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK
:::::::::::::::::::::::::::::::::
NP_065 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK
130 140 150
>>NP_001961 (OMIM: 600187) eukaryotic translation initia (154 aa)
initn: 865 init1: 865 opt: 865 Z-score: 1164.6 bits: 221.6 E(85289): 3.9e-58
Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:1-150)
10 20 30 40 50 60
pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
:::..:: :::::::.:.::::::::::::::::::::::::::::::::::::::::::
NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG
::::::::::::::::::::::::::::.::: ::::::::: ..:::::::.::::.::
NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK
:::: ::. ::.. ..:. ::.:: :::::
NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
130 140 150
>>XP_005256566 (OMIM: 600187) PREDICTED: eukaryotic tran (154 aa)
initn: 865 init1: 865 opt: 865 Z-score: 1164.6 bits: 221.6 E(85289): 3.9e-58
Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:1-150)
10 20 30 40 50 60
pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
:::..:: :::::::.:.::::::::::::::::::::::::::::::::::::::::::
XP_005 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG
::::::::::::::::::::::::::::.::: ::::::::: ..:::::::.::::.::
XP_005 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK
:::: ::. ::.. ..:. ::.:: :::::
XP_005 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
130 140 150
>>NP_001137233 (OMIM: 600187) eukaryotic translation ini (154 aa)
initn: 865 init1: 865 opt: 865 Z-score: 1164.6 bits: 221.6 E(85289): 3.9e-58
Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:1-150)
10 20 30 40 50 60
pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
:::..:: :::::::.:.::::::::::::::::::::::::::::::::::::::::::
NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG
::::::::::::::::::::::::::::.::: ::::::::: ..:::::::.::::.::
NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK
:::: ::. ::.. ..:. ::.:: :::::
NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
130 140 150
>>NP_001137234 (OMIM: 600187) eukaryotic translation ini (154 aa)
initn: 865 init1: 865 opt: 865 Z-score: 1164.6 bits: 221.6 E(85289): 3.9e-58
Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:1-150)
10 20 30 40 50 60
pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
:::..:: :::::::.:.::::::::::::::::::::::::::::::::::::::::::
NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG
::::::::::::::::::::::::::::.::: ::::::::: ..:::::::.::::.::
NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK
:::: ::. ::.. ..:. ::.:: :::::
NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
130 140 150
>>NP_001137232 (OMIM: 600187) eukaryotic translation ini (184 aa)
initn: 865 init1: 865 opt: 865 Z-score: 1163.4 bits: 221.6 E(85289): 4.6e-58
Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:31-180)
10 20 30
pF1KE5 MADEIDFTTGDAGASSTYPMQCSALRKNGF
:::..:: :::::::.:.::::::::::::
NP_001 MCGTGGTDSKTRRPPHRASFLKRLESKPLKMADDLDFETGDAGASATFPMQCSALRKNGF
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE5 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_001 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE5 LICIQDGYLSLLTETGEVREDLKLPEGELGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK
:: ::::::::: ..:::::::.::::.:::::: ::. ::.. ..:. ::.:: :::::
NP_001 LIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK
130 140 150 160 170 180
pF1KE5 PCK
NP_001 AMAK
153 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 21:37:29 2016 done: Mon Nov 7 21:37:30 2016
Total Scan time: 4.640 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]