FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5122, 113 aa
  1>>>pF1KE5122 113 - 113 aa - 113 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4256+/-0.000348; mu= 14.4295+/- 0.021
 mean_var=50.7270+/-10.430, 0's: 0 Z-trim(112.8): 10  B-trim: 0 in 0/50
 Lambda= 0.180075
 statistics sampled from 21889 (21895) to 21889 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.257), width:  16
 Scan time:  3.940

The best scores are:                                      opt bits E(85289)
NP_001335 (OMIM: 600243) dolichyl-diphosphooligosa ( 113)  727 196.1   1e-50


>>NP_001335 (OMIM: 600243) dolichyl-diphosphooligosaccha  (113 aa)
 initn: 727 init1: 727 opt: 727  Z-score: 1031.7  bits: 196.1 E(85289): 1e-50
Smith-Waterman score: 727; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KE5 MSASVVSVISRFLEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSASVVSVISRFLEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGF
               10        20        30        40        50        60

               70        80        90       100       110   
pF1KE5 ISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG
               70        80        90       100       110   




113 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:18:20 2016 done: Tue Nov  8 07:18:21 2016
 Total Scan time:  3.940 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]