FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5114, 118 aa
  1>>>pF1KE5114 118 - 118 aa - 118 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7968+/-0.000249; mu= 14.5108+/- 0.016
 mean_var=75.5303+/-15.253, 0's: 0 Z-trim(122.6): 10  B-trim: 747 in 2/55
 Lambda= 0.147575
 statistics sampled from 40960 (40970) to 40960 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.48), width:  16
 Scan time:  4.240

The best scores are:                                      opt bits E(85289)
NP_113640 (OMIM: 614547) RNMT-activating mini prot ( 118)  889 197.0   6e-51


>>NP_113640 (OMIM: 614547) RNMT-activating mini protein   (118 aa)
 initn: 889 init1: 889 opt: 889  Z-score: 1035.6  bits: 197.0 E(85289): 6e-51
Smith-Waterman score: 889; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE5 MTDTAEAVPKFEEMFASRFTENDKEYQEYLKRPPESPPIVEEWNSRAGGNQRNRGNRLQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 MTDTAEAVPKFEEMFASRFTENDKEYQEYLKRPPESPPIVEEWNSRAGGNQRNRGNRLQD
               10        20        30        40        50        60

               70        80        90       100       110        
pF1KE5 NRQFRGRDNRWGWPSDNRSNQWHGRSWGNNYPQHRQEPYYPQQYGHYGYNQRPPYGYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 NRQFRGRDNRWGWPSDNRSNQWHGRSWGNNYPQHRQEPYYPQQYGHYGYNQRPPYGYY
               70        80        90       100       110        




118 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:28:29 2016 done: Mon Nov  7 21:28:30 2016
 Total Scan time:  4.240 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]