FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5112, 144 aa
  1>>>pF1KE5112 144 - 144 aa - 144 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3896+/-0.000303; mu= 11.1357+/- 0.019
 mean_var=66.0246+/-12.980, 0's: 0 Z-trim(116.9): 3  B-trim: 276 in 1/51
 Lambda= 0.157842
 statistics sampled from 28391 (28394) to 28391 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.333), width:  16
 Scan time:  4.800

The best scores are:                                      opt bits E(85289)
NP_004672 (OMIM: 400014) eukaryotic translation in ( 144)  973 229.7 1.3e-60
NP_001403 (OMIM: 300186) eukaryotic translation in ( 144)  971 229.2 1.7e-60
NP_001265541 (OMIM: 400014) eukaryotic translation ( 127)  483 118.1 4.4e-27


>>NP_004672 (OMIM: 400014) eukaryotic translation initia  (144 aa)
 initn: 973 init1: 973 opt: 973  Z-score: 1209.4  bits: 229.7 E(85289): 1.3e-60
Smith-Waterman score: 973; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KE5 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT
               70        80        90       100       110       120

              130       140    
pF1KE5 FGPGDDDEIQFDDIGDDDEDIDDI
       ::::::::::::::::::::::::
NP_004 FGPGDDDEIQFDDIGDDDEDIDDI
              130       140    

>>NP_001403 (OMIM: 300186) eukaryotic translation initia  (144 aa)
 initn: 971 init1: 971 opt: 971  Z-score: 1206.9  bits: 229.2 E(85289): 1.7e-60
Smith-Waterman score: 971; 99.3% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KE5 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH
       :::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_001 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT
               70        80        90       100       110       120

              130       140    
pF1KE5 FGPGDDDEIQFDDIGDDDEDIDDI
       ::::::::::::::::::::::::
NP_001 FGPGDDDEIQFDDIGDDDEDIDDI
              130       140    

>>NP_001265541 (OMIM: 400014) eukaryotic translation ini  (127 aa)
 initn: 485 init1: 461 opt: 483  Z-score: 607.2  bits: 118.1 E(85289): 4.4e-27
Smith-Waterman score: 816; 88.2% identity (88.2% similar) in 144 aa overlap (1-144:1-127)

               10        20        30        40        50        60
pF1KE5 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT
       ::::::::                 :::::::::::::::::::::::::::::::::::
NP_001 IRGKLRKK-----------------DNKADVILKYNADEARSLKAYGELPEHAKINETDT
                                70        80        90       100   

              130       140    
pF1KE5 FGPGDDDEIQFDDIGDDDEDIDDI
       ::::::::::::::::::::::::
NP_001 FGPGDDDEIQFDDIGDDDEDIDDI
           110       120       




144 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:27:10 2016 done: Mon Nov  7 21:27:11 2016
 Total Scan time:  4.800 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]