FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5110, 157 aa
  1>>>pF1KE5110 157 - 157 aa - 157 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0160+/-0.000347; mu= 10.5025+/- 0.022
 mean_var=102.5404+/-20.381, 0's: 0 Z-trim(117.0): 6  B-trim: 1452 in 1/55
 Lambda= 0.126656
 statistics sampled from 28654 (28659) to 28654 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.336), width:  16
 Scan time:  5.350

The best scores are:                                      opt bits E(85289)
NP_000977 (OMIM: 604180) 60S ribosomal protein L24 ( 157) 1015 195.0 4.2e-50
NP_057388 (OMIM: 613262) probable ribosome biogene ( 163)  271 59.0 3.7e-09


>>NP_000977 (OMIM: 604180) 60S ribosomal protein L24 [Ho  (157 aa)
 initn: 1015 init1: 1015 opt: 1015  Z-score: 1020.4  bits: 195.0 E(85289): 4.2e-50
Smith-Waterman score: 1015; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1-157)

               10        20        30        40        50        60
pF1KE5 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQ
               70        80        90       100       110       120

              130       140       150       
pF1KE5 ASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR
       :::::::::::::::::::::::::::::::::::::
NP_000 ASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR
              130       140       150       

>>NP_057388 (OMIM: 613262) probable ribosome biogenesis   (163 aa)
 initn: 199 init1: 173 opt: 271  Z-score: 285.5  bits: 59.0 E(85289): 3.7e-09
Smith-Waterman score: 271; 31.4% identity (63.5% similar) in 156 aa overlap (1-147:1-154)

               10        20        30        40        50        60
pF1KE5 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK
       :..: : : .  ::::::  ..:.: :::.: ..::.. : .:::::.. ::  .:.   
NP_057 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG
               10        20        30        40        50        60

                   70        80        90       100        110     
pF1KE5 K----GQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQR-EQAIRAAKEA
       :     .: :..:.:..  .:.:: . . .. : : . ..  . :.:.   . ..  :: 
NP_057 KELTVDNSFEFEKRRNE-PIKYQRELWNKTI-DAMKRVEEIKQKRQAKFIMNRLKKNKEL
               70         80        90        100       110        

         120        130       140          150       
pF1KE5 KKAKQASK-KTAMAAAKAPTKAAPKQ---KIVKPVKVSAPRVGGKR
       .:... .. :  .   .::  .  ::   :.:. ..          
NP_057 QKVQDIKEVKQNIHLIRAPLAGKGKQLEEKMVQQLQEDVDMEDAP 
      120       130       140       150       160    




157 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:25:46 2016 done: Mon Nov  7 21:25:47 2016
 Total Scan time:  5.350 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]