FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5108, 138 aa
  1>>>pF1KE5108 138 - 138 aa - 138 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0941+/-0.000251; mu= 0.4517+/- 0.016
 mean_var=155.8002+/-31.289, 0's: 0 Z-trim(125.6): 1  B-trim: 552 in 1/54
 Lambda= 0.102752
 statistics sampled from 49816 (49817) to 49816 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.869), E-opt: 0.2 (0.584), width:  16
 Scan time:  4.650

The best scores are:                                      opt bits E(85289)
NP_002247 (OMIM: 603286,614842) metastasis-suppres ( 138)  945 149.9 1.2e-36


>>NP_002247 (OMIM: 603286,614842) metastasis-suppressor   (138 aa)
 initn: 945 init1: 945 opt: 945  Z-score: 779.0  bits: 149.9 E(85289): 1.2e-36
Smith-Waterman score: 945; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KE5 MNSLVSWQLLLFLCATHFGEPLEKVASVGNSRPTGQQLESLGLLAPGEQSLPCTERKPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MNSLVSWQLLLFLCATHFGEPLEKVASVGNSRPTGQQLESLGLLAPGEQSLPCTERKPAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TARLSRRGTSLSPPPESSGSPQQPGLSAPHSRQIPAPQGAVLVQREKDLPNYNWNSFGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TARLSRRGTSLSPPPESSGSPQQPGLSAPHSRQIPAPQGAVLVQREKDLPNYNWNSFGLR
               70        80        90       100       110       120

              130        
pF1KE5 FGKREAAPGNHGRSAGRG
       ::::::::::::::::::
NP_002 FGKREAAPGNHGRSAGRG
              130        




138 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:23:57 2016 done: Mon Nov  7 21:23:57 2016
 Total Scan time:  4.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]