Result of FASTA (omim) for
pFN21AE5107
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5107, 103 aa
1>>>pF1KE5107 103 - 103 aa - 103 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0551+/-0.000293; mu= 10.2070+/- 0.018
mean_var=53.5525+/-10.781, 0's: 0 Z-trim(117.8): 30 B-trim: 525 in 1/53
Lambda= 0.175261
statistics sampled from 30016 (30046) to 30016 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.352), width: 16
Scan time: 4.470
The best scores are: opt bits E(85289)
NP_057283 (OMIM: 607287) U6 snRNA-associated Sm-li ( 103) 681 179.4 9e-46
XP_016882358 (OMIM: 607287) PREDICTED: U6 snRNA-as ( 160) 482 129.2 1.9e-30
NP_003087 (OMIM: 603542) small nuclear ribonucleop ( 76) 182 53.2 6.6e-08
NP_001304096 (OMIM: 603542) small nuclear ribonucl ( 68) 169 49.9 5.8e-07
NP_001304098 (OMIM: 603542) small nuclear ribonucl ( 64) 165 48.8 1.1e-06
NP_001304097 (OMIM: 603542) small nuclear ribonucl ( 64) 165 48.8 1.1e-06
NP_001304095 (OMIM: 603542) small nuclear ribonucl ( 75) 156 46.6 6.2e-06
XP_016860263 (OMIM: 603542) PREDICTED: small nucle ( 96) 156 46.6 7.7e-06
NP_001304094 (OMIM: 603542) small nuclear ribonucl ( 96) 156 46.6 7.7e-06
NP_001304100 (OMIM: 603542) small nuclear ribonucl ( 58) 149 44.8 1.7e-05
NP_057284 (OMIM: 607288) LSM8 homolog, U6 small nu ( 96) 132 40.6 0.00052
NP_003082 (OMIM: 117650,182282) small nuclear ribo ( 231) 129 40.0 0.0019
NP_937859 (OMIM: 117650,182282) small nuclear ribo ( 240) 129 40.0 0.002
NP_073719 (OMIM: 176270,182279,209850) small nucle ( 240) 127 39.5 0.0028
NP_073717 (OMIM: 176270,182279,209850) small nucle ( 240) 127 39.5 0.0028
NP_073716 (OMIM: 176270,182279,209850) small nucle ( 240) 127 39.5 0.0028
NP_073718 (OMIM: 176270,182279,209850) small nucle ( 240) 127 39.5 0.0028
NP_003088 (OMIM: 176270,182279,209850) small nucle ( 240) 127 39.5 0.0028
>>NP_057283 (OMIM: 607287) U6 snRNA-associated Sm-like p (103 aa)
initn: 681 init1: 681 opt: 681 Z-score: 942.8 bits: 179.4 E(85289): 9e-46
Smith-Waterman score: 681; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KE5 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
10 20 30 40 50 60
70 80 90 100
pF1KE5 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
:::::::::::::::::::::::::::::::::::::::::::
NP_057 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
70 80 90 100
>>XP_016882358 (OMIM: 607287) PREDICTED: U6 snRNA-associ (160 aa)
initn: 674 init1: 481 opt: 482 Z-score: 667.8 bits: 129.2 E(85289): 1.9e-30
Smith-Waterman score: 482; 90.0% identity (95.0% similar) in 80 aa overlap (24-103:81-160)
10 20 30 40 50
pF1KE5 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIE
:.... :::::::::::::::::::::
XP_016 PRIPSLSLWIGLSWTFHRNGISRCAAFCVWRLSLSVTSSASGILKGFDPLLNLVLDGTIE
60 70 80 90 100 110
60 70 80 90 100
pF1KE5 YMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
120 130 140 150 160
>--
initn: 216 init1: 207 opt: 207 Z-score: 292.0 bits: 59.6 E(85289): 1.6e-09
Smith-Waterman score: 207; 91.7% identity (97.2% similar) in 36 aa overlap (1-36:1-36)
10 20 30 40 50 60
pF1KE5 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
::::::::::::::::::::::::::::::::.: .
XP_016 MADKEKKKKESILDLSKYIDKTIRVKFQGGREGSPVPISHHCLSHPWPWHPRIPSLSLWI
10 20 30 40 50 60
70 80 90 100
pF1KE5 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
XP_016 GLSWTFHRNGISRCAAFCVWRLSLSVTSSASGILKGFDPLLNLVLDGTIEYMRDPDDQYK
70 80 90 100 110 120
>>NP_003087 (OMIM: 603542) small nuclear ribonucleoprote (76 aa)
initn: 164 init1: 137 opt: 182 Z-score: 263.0 bits: 53.2 E(85289): 6.6e-08
Smith-Waterman score: 182; 39.4% identity (74.6% similar) in 71 aa overlap (14-84:8-70)
10 20 30 40 50 60
pF1KE5 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
.:.:..:: . .:..:::...:::.::::..:::.: .: : .
NP_003 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE-MATSGQ
10 20 30 40 50
70 80 90 100
pF1KE5 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
: ..:.:: ::.:....
NP_003 Q-------NNIGMVVIRGNSIIMLEALERV
60 70
>>NP_001304096 (OMIM: 603542) small nuclear ribonucleopr (68 aa)
initn: 164 init1: 137 opt: 169 Z-score: 246.0 bits: 49.9 E(85289): 5.8e-07
Smith-Waterman score: 169; 38.8% identity (73.1% similar) in 67 aa overlap (18-84:4-62)
10 20 30 40 50 60
pF1KE5 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
..:: . .:..:::...:::.::::..:::.: .: : .
NP_001 MCLFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE-MATSGQ
10 20 30 40
70 80 90 100
pF1KE5 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
: ..:.:: ::.:....
NP_001 Q-------NNIGMVVIRGNSIIMLEALERV
50 60
>>NP_001304098 (OMIM: 603542) small nuclear ribonucleopr (64 aa)
initn: 164 init1: 137 opt: 165 Z-score: 240.9 bits: 48.8 E(85289): 1.1e-06
Smith-Waterman score: 165; 39.4% identity (72.7% similar) in 66 aa overlap (19-84:1-58)
10 20 30 40 50 60
pF1KE5 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
.:: . .:..:::...:::.::::..:::.: .: : .
NP_001 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE-MATSGQ
10 20 30 40
70 80 90 100
pF1KE5 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
: ..:.:: ::.:....
NP_001 Q-------NNIGMVVIRGNSIIMLEALERV
50 60
>>NP_001304097 (OMIM: 603542) small nuclear ribonucleopr (64 aa)
initn: 164 init1: 137 opt: 165 Z-score: 240.9 bits: 48.8 E(85289): 1.1e-06
Smith-Waterman score: 165; 39.4% identity (72.7% similar) in 66 aa overlap (19-84:1-58)
10 20 30 40 50 60
pF1KE5 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
.:: . .:..:::...:::.::::..:::.: .: : .
NP_001 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE-MATSGQ
10 20 30 40
70 80 90 100
pF1KE5 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
: ..:.:: ::.:....
NP_001 Q-------NNIGMVVIRGNSIIMLEALERV
50 60
>>NP_001304095 (OMIM: 603542) small nuclear ribonucleopr (75 aa)
initn: 156 init1: 137 opt: 156 Z-score: 227.5 bits: 46.6 E(85289): 6.2e-06
Smith-Waterman score: 171; 38.0% identity (74.6% similar) in 71 aa overlap (14-84:8-69)
10 20 30 40 50 60
pF1KE5 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
.:.:..:: . .:..:::...:::.::::..:::.: .: : .
NP_001 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE-MATSGQ
10 20 30 40 50
70 80 90 100
pF1KE5 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
: ..:.:. ::.:....
NP_001 Q-------NNIGMVI-RGNSIIMLEALERV
60 70
>>XP_016860263 (OMIM: 603542) PREDICTED: small nuclear r (96 aa)
initn: 146 init1: 137 opt: 156 Z-score: 225.8 bits: 46.6 E(85289): 7.7e-06
Smith-Waterman score: 156; 50.0% identity (90.0% similar) in 40 aa overlap (14-53:8-47)
10 20 30 40 50 60
pF1KE5 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
.:.:..:: . .:..:::...:::.::::..:::.: .:
XP_016 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ
10 20 30 40 50
70 80 90 100
pF1KE5 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
XP_016 NNIGMVDNIPNKAVSPKFLKKVNQKGQLTFSKLLSIKTSKEW
60 70 80 90
>>NP_001304094 (OMIM: 603542) small nuclear ribonucleopr (96 aa)
initn: 146 init1: 137 opt: 156 Z-score: 225.8 bits: 46.6 E(85289): 7.7e-06
Smith-Waterman score: 156; 50.0% identity (90.0% similar) in 40 aa overlap (14-53:8-47)
10 20 30 40 50 60
pF1KE5 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
.:.:..:: . .:..:::...:::.::::..:::.: .:
NP_001 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ
10 20 30 40 50
70 80 90 100
pF1KE5 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
NP_001 NNIGMVDNIPNKAVSPKFLKKVNQKGQLTFSKLLSIKTSKEW
60 70 80 90
>>NP_001304100 (OMIM: 603542) small nuclear ribonucleopr (58 aa)
initn: 142 init1: 115 opt: 149 Z-score: 219.7 bits: 44.8 E(85289): 1.7e-05
Smith-Waterman score: 149; 40.0% identity (73.3% similar) in 60 aa overlap (25-84:1-52)
10 20 30 40 50 60
pF1KE5 MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
.:..:::...:::.::::..:::.: .: : .
NP_001 MKLNGGRHVQGILRGFDPFMNLVIDECVE-MATSGQ
10 20 30
70 80 90 100
pF1KE5 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA
: ..:.:: ::.:....
NP_001 Q-------NNIGMVVIRGNSIIMLEALERV
40 50
103 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 21:23:22 2016 done: Mon Nov 7 21:23:23 2016
Total Scan time: 4.470 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]