FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5106, 51 aa
  1>>>pF1KE5106 51 - 51 aa - 51 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.0948+/-0.00023; mu= 10.9493+/- 0.015
 mean_var=43.6939+/- 8.837, 0's: 0 Z-trim(122.1): 2  B-trim: 1958 in 1/52
 Lambda= 0.194028
 statistics sampled from 39816 (39818) to 39816 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.467), width:  16
 Scan time:  3.350

The best scores are:                                      opt bits E(85289)
NP_000991 (OMIM: 300899) 60S ribosomal protein L39 (  51)  353 104.5 7.6e-24
NP_443201 (OMIM: 607547) 60S ribosomal protein L39 (  51)  327 97.2 1.2e-21


>>NP_000991 (OMIM: 300899) 60S ribosomal protein L39 [Ho  (51 aa)
 initn: 353 init1: 353 opt: 353  Z-score: 549.0  bits: 104.5 E(85289): 7.6e-24
Smith-Waterman score: 353; 100.0% identity (100.0% similar) in 51 aa overlap (1-51:1-51)

               10        20        30        40        50 
pF1KE5 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL
               10        20        30        40        50 

>>NP_443201 (OMIM: 607547) 60S ribosomal protein L39-lik  (51 aa)
 initn: 327 init1: 327 opt: 327  Z-score: 509.7  bits: 97.2 E(85289): 1.2e-21
Smith-Waterman score: 327; 92.2% identity (96.1% similar) in 51 aa overlap (1-51:1-51)

               10        20        30        40        50 
pF1KE5 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL
       ::::::: :::::::::::::::::::.:: :.::::::::::::::::::
NP_443 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL
               10        20        30        40        50 




51 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:22:30 2016 done: Mon Nov  7 21:22:31 2016
 Total Scan time:  3.350 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]