FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5106, 51 aa
  1>>>pF1KE5106 51 - 51 aa - 51 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.0333+/-0.000455; mu= 11.3182+/- 0.028
 mean_var=43.9810+/- 8.789, 0's: 0 Z-trim(114.8): 3  B-trim: 0 in 0/52
 Lambda= 0.193393
 statistics sampled from 15361 (15363) to 15361 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.854), E-opt: 0.2 (0.472), width:  16
 Scan time:  1.170

The best scores are:                                      opt bits E(32554)
CCDS14586.1 RPL39 gene_id:6170|Hs108|chrX          (  51)  353 104.2 3.7e-24
CCDS3286.1 RPL39L gene_id:116832|Hs108|chr3        (  51)  327 96.9 5.7e-22


>>CCDS14586.1 RPL39 gene_id:6170|Hs108|chrX               (51 aa)
 initn: 353 init1: 353 opt: 353  Z-score: 547.2  bits: 104.2 E(32554): 3.7e-24
Smith-Waterman score: 353; 100.0% identity (100.0% similar) in 51 aa overlap (1-51:1-51)

               10        20        30        40        50 
pF1KE5 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL
               10        20        30        40        50 

>>CCDS3286.1 RPL39L gene_id:116832|Hs108|chr3             (51 aa)
 initn: 327 init1: 327 opt: 327  Z-score: 508.0  bits: 96.9 E(32554): 5.7e-22
Smith-Waterman score: 327; 92.2% identity (96.1% similar) in 51 aa overlap (1-51:1-51)

               10        20        30        40        50 
pF1KE5 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL
       ::::::: :::::::::::::::::::.:: :.::::::::::::::::::
CCDS32 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL
               10        20        30        40        50 




51 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:22:30 2016 done: Mon Nov  7 21:22:30 2016
 Total Scan time:  1.170 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]