Result of FASTA (omim) for
pFN21AE5103
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5103, 103 aa
1>>>pF1KE5103 103 - 103 aa - 103 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8610+/-0.000258; mu= 11.6511+/- 0.016
mean_var=49.4293+/- 9.813, 0's: 0 Z-trim(119.6): 20 B-trim: 262 in 1/54
Lambda= 0.182424
statistics sampled from 33805 (33825) to 33805 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.397), width: 16
Scan time: 3.830
The best scores are: opt bits E(85289)
XP_016872540 (OMIM: 604433,613119) PREDICTED: pota ( 103) 683 186.3 7.5e-48
XP_016872536 (OMIM: 604433,613119) PREDICTED: pota ( 103) 683 186.3 7.5e-48
XP_016872539 (OMIM: 604433,613119) PREDICTED: pota ( 103) 683 186.3 7.5e-48
XP_016872538 (OMIM: 604433,613119) PREDICTED: pota ( 103) 683 186.3 7.5e-48
XP_016872541 (OMIM: 604433,613119) PREDICTED: pota ( 103) 683 186.3 7.5e-48
XP_016872537 (OMIM: 604433,613119) PREDICTED: pota ( 103) 683 186.3 7.5e-48
NP_005463 (OMIM: 604433,613119) potassium voltage- ( 103) 683 186.3 7.5e-48
XP_011543015 (OMIM: 604433,613119) PREDICTED: pota ( 147) 683 186.4 1e-47
NP_036414 (OMIM: 300328) potassium voltage-gated c ( 142) 151 46.3 1.4e-05
>>XP_016872540 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa)
initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48
Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
10 20 30 40 50 60
70 80 90 100
pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
:::::::::::::::::::::::::::::::::::::::::::
XP_016 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
70 80 90 100
>>XP_016872536 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa)
initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48
Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
10 20 30 40 50 60
70 80 90 100
pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
:::::::::::::::::::::::::::::::::::::::::::
XP_016 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
70 80 90 100
>>XP_016872539 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa)
initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48
Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
10 20 30 40 50 60
70 80 90 100
pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
:::::::::::::::::::::::::::::::::::::::::::
XP_016 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
70 80 90 100
>>XP_016872538 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa)
initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48
Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
10 20 30 40 50 60
70 80 90 100
pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
:::::::::::::::::::::::::::::::::::::::::::
XP_016 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
70 80 90 100
>>XP_016872541 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa)
initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48
Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
10 20 30 40 50 60
70 80 90 100
pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
:::::::::::::::::::::::::::::::::::::::::::
XP_016 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
70 80 90 100
>>XP_016872537 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa)
initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48
Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
10 20 30 40 50 60
70 80 90 100
pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
:::::::::::::::::::::::::::::::::::::::::::
XP_016 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
70 80 90 100
>>NP_005463 (OMIM: 604433,613119) potassium voltage-gate (103 aa)
initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48
Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103)
10 20 30 40 50 60
pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
10 20 30 40 50 60
70 80 90 100
pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
:::::::::::::::::::::::::::::::::::::::::::
NP_005 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
70 80 90 100
>>XP_011543015 (OMIM: 604433,613119) PREDICTED: potassiu (147 aa)
initn: 683 init1: 683 opt: 683 Z-score: 977.6 bits: 186.4 E(85289): 1e-47
Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:45-147)
10 20 30
pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLL
::::::::::::::::::::::::::::::
XP_011 RRVQRANGRPGALLRGRASTESSPTSIPVAMETTNGTETWYESLHAVLKALNATLHSNLL
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE5 CRPGPGLGPDNQTEERRASLPGRDDNSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CRPGPGLGPDNQTEERRASLPGRDDNSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSD
80 90 100 110 120 130
100
pF1KE5 PYHVYIKNRVSMI
:::::::::::::
XP_011 PYHVYIKNRVSMI
140
>>NP_036414 (OMIM: 300328) potassium voltage-gated chann (142 aa)
initn: 154 init1: 140 opt: 151 Z-score: 221.1 bits: 46.3 E(85289): 1.4e-05
Smith-Waterman score: 151; 42.9% identity (76.2% similar) in 63 aa overlap (32-91:34-94)
10 20 30 40 50
pF1KE5 ETTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLG--PDNQTEERRASLPGRDDNSYM
::. :.: :: . .. .: : :..:.
NP_036 SESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKG--DDAYL
10 20 30 40 50 60
60 70 80 90 100
pF1KE5 YILFVMFLFAVTVGSLILGYTRSRK-VDKRSDPYHVYIKNRVSMI
:::..:...: .:.:::.:::::: :. ...:
NP_036 YILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQA
70 80 90 100 110 120
NP_036 EGRRQLASEGLPALAQGAERV
130 140
103 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 21:06:10 2016 done: Mon Nov 7 21:06:11 2016
Total Scan time: 3.830 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]