Result of FASTA (ccds) for
pFN21AE5102
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5102, 147 aa
1>>>pF1KE5102 147 - 147 aa - 147 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1960+/-0.000669; mu= 11.2905+/- 0.040
mean_var=53.6295+/-10.673, 0's: 0 Z-trim(108.8): 13 B-trim: 0 in 0/50
Lambda= 0.175135
statistics sampled from 10427 (10439) to 10427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.321), width: 16
Scan time: 1.240
The best scores are: opt bits E(32554)
CCDS7753.1 HBB gene_id:3043|Hs108|chr11 ( 147) 991 257.9 1.7e-69
CCDS31376.1 HBD gene_id:3045|Hs108|chr11 ( 147) 929 242.2 8.7e-65
CCDS7756.1 HBE1 gene_id:3046|Hs108|chr11 ( 147) 774 203.0 5.4e-53
CCDS7755.1 HBG2 gene_id:3048|Hs108|chr11 ( 147) 756 198.5 1.3e-51
CCDS7754.1 HBG1 gene_id:3047|Hs108|chr11 ( 147) 745 195.7 8.6e-51
CCDS10398.1 HBA2 gene_id:3040|Hs108|chr16 ( 142) 381 103.7 4e-23
CCDS10399.1 HBA1 gene_id:3039|Hs108|chr16 ( 142) 381 103.7 4e-23
CCDS10397.1 HBZ gene_id:3050|Hs108|chr16 ( 142) 321 88.6 1.5e-18
CCDS10400.1 HBQ1 gene_id:3049|Hs108|chr16 ( 142) 316 87.3 3.6e-18
CCDS32347.1 HBM gene_id:3042|Hs108|chr16 ( 141) 281 78.5 1.6e-15
>>CCDS7753.1 HBB gene_id:3043|Hs108|chr11 (147 aa)
initn: 991 init1: 991 opt: 991 Z-score: 1361.3 bits: 257.9 E(32554): 1.7e-69
Smith-Waterman score: 991; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE5 MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFG
70 80 90 100 110 120
130 140
pF1KE5 KEFTPPVQAAYQKVVAGVANALAHKYH
:::::::::::::::::::::::::::
CCDS77 KEFTPPVQAAYQKVVAGVANALAHKYH
130 140
>>CCDS31376.1 HBD gene_id:3045|Hs108|chr11 (147 aa)
initn: 929 init1: 929 opt: 929 Z-score: 1276.6 bits: 242.2 E(32554): 8.7e-65
Smith-Waterman score: 929; 93.2% identity (98.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE5 MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK
:::::::::.::.::::::::: :::::::::::::::::::::::::::.:::::::::
CCDS31 MVHLTPEEKTAVNALWGKVNVDAVGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGNPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFG
::::::::::::::::::::::::::. ::::::::::::::::::::::::::::..::
CCDS31 VKAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFG
70 80 90 100 110 120
130 140
pF1KE5 KEFTPPVQAAYQKVVAGVANALAHKYH
::::: .::::::::::::::::::::
CCDS31 KEFTPQMQAAYQKVVAGVANALAHKYH
130 140
>>CCDS7756.1 HBE1 gene_id:3046|Hs108|chr11 (147 aa)
initn: 774 init1: 774 opt: 774 Z-score: 1065.0 bits: 203.0 E(32554): 5.4e-53
Smith-Waterman score: 774; 75.5% identity (93.9% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE5 MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK
:::.: :::.:::.::.:.::.:.:::::::::::::::::::.:::.::.:.:..::::
CCDS77 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFG
::::::::: .:.:.. ..:::: .:: ::::::::::::::::.:::::.: .:: :::
CCDS77 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG
70 80 90 100 110 120
130 140
pF1KE5 KEFTPPVQAAYQKVVAGVANALAHKYH
::::: ::::.::.:..:: :::::::
CCDS77 KEFTPEVQAAWQKLVSAVAIALAHKYH
130 140
>>CCDS7755.1 HBG2 gene_id:3048|Hs108|chr11 (147 aa)
initn: 756 init1: 756 opt: 756 Z-score: 1040.4 bits: 198.5 E(32554): 1.3e-51
Smith-Waterman score: 756; 73.5% identity (93.2% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE5 MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK
: :.: :.:...:.:::::::...:::.:::::::::::::::.:::.::. .:.:::::
CCDS77 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFG
::::::::: ...:.. :::.:::::: ::::::::::::::::.::::::: ::: :::
CCDS77 VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG
70 80 90 100 110 120
130 140
pF1KE5 KEFTPPVQAAYQKVVAGVANALAHKYH
::::: :::..::.:.:::.::. .::
CCDS77 KEFTPEVQASWQKMVTGVASALSSRYH
130 140
>>CCDS7754.1 HBG1 gene_id:3047|Hs108|chr11 (147 aa)
initn: 745 init1: 745 opt: 745 Z-score: 1025.4 bits: 195.7 E(32554): 8.6e-51
Smith-Waterman score: 745; 72.8% identity (92.5% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE5 MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK
: :.: :.:...:.:::::::...:::.:::::::::::::::.:::.::. .:.:::::
CCDS77 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFG
::::::::: ...:. :::.:::::: ::::::::::::::::.::::::: ::: :::
CCDS77 VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG
70 80 90 100 110 120
130 140
pF1KE5 KEFTPPVQAAYQKVVAGVANALAHKYH
::::: :::..::.:..::.::. .::
CCDS77 KEFTPEVQASWQKMVTAVASALSSRYH
130 140
>>CCDS10398.1 HBA2 gene_id:3040|Hs108|chr16 (142 aa)
initn: 325 init1: 273 opt: 381 Z-score: 528.6 bits: 103.7 E(32554): 4e-23
Smith-Waterman score: 381; 43.4% identity (74.5% similar) in 145 aa overlap (4-146:3-141)
10 20 30 40 50
pF1KE5 MVHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGN
:.: .:. : : :::: .. : :.::: :... .: :. .: : ::: :.
CCDS10 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGS
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 PKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHH
.::.::::: :.....::.:.. .....::.:: ::.::: ::.::.. :. .:: :
CCDS10 AQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH
60 70 80 90 100 110
120 130 140
pF1KE5 FGKEFTPPVQAAYQKVVAGVANALAHKYH
. :::: :.:. .: .:.:...:. ::
CCDS10 LPAEFTPAVHASLDKFLASVSTVLTSKYR
120 130 140
>>CCDS10399.1 HBA1 gene_id:3039|Hs108|chr16 (142 aa)
initn: 325 init1: 273 opt: 381 Z-score: 528.6 bits: 103.7 E(32554): 4e-23
Smith-Waterman score: 381; 43.4% identity (74.5% similar) in 145 aa overlap (4-146:3-141)
10 20 30 40 50
pF1KE5 MVHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGN
:.: .:. : : :::: .. : :.::: :... .: :. .: : ::: :.
CCDS10 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLS-----HGS
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 PKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHH
.::.::::: :.....::.:.. .....::.:: ::.::: ::.::.. :. .:: :
CCDS10 AQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH
60 70 80 90 100 110
120 130 140
pF1KE5 FGKEFTPPVQAAYQKVVAGVANALAHKYH
. :::: :.:. .: .:.:...:. ::
CCDS10 LPAEFTPAVHASLDKFLASVSTVLTSKYR
120 130 140
>>CCDS10397.1 HBZ gene_id:3050|Hs108|chr16 (142 aa)
initn: 231 init1: 231 opt: 321 Z-score: 446.6 bits: 88.6 E(32554): 1.5e-18
Smith-Waterman score: 321; 37.2% identity (73.1% similar) in 145 aa overlap (4-146:3-141)
10 20 30 40 50
pF1KE5 MVHLTPEEKSAVTALWGKVNV--DEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGN
:: :.. ....:.:... : .: :.: ::.. .: :. .: : :: : :.
CCDS10 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF-DLH-P----GS
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 PKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHH
...:::.::..: .:.. .:.. :... ::::: :.::: ::.::.. :. .:: .
CCDS10 AQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAAR
60 70 80 90 100 110
120 130 140
pF1KE5 FGKEFTPPVQAAYQKVVAGVANALAHKYH
: .:: ..::..: .. :...:..::
CCDS10 FPADFTAEAHAAWDKFLSVVSSVLTEKYR
120 130 140
>>CCDS10400.1 HBQ1 gene_id:3049|Hs108|chr16 (142 aa)
initn: 294 init1: 223 opt: 316 Z-score: 439.8 bits: 87.3 E(32554): 3.6e-18
Smith-Waterman score: 316; 40.0% identity (70.3% similar) in 145 aa overlap (4-146:3-141)
10 20 30 40 50
pF1KE5 MVHLTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGN
:. :... : ::: :. :: ::: : ....: :. .: : ::: : :.
CCDS10 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYF-SHLDLS-P----GS
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 PKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHH
.:.:::.:: :.: .. .::.: ....::.:: .:.::: .:.:::. :. .::.:
CCDS10 SQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARH
60 70 80 90 100 110
120 130 140
pF1KE5 FGKEFTPPVQAAYQKVVAGVANALAHKYH
. .:.: .::. .: .. : .::. .:
CCDS10 YPGDFSPALQASLDKFLSHVISALVSEYR
120 130 140
>>CCDS32347.1 HBM gene_id:3042|Hs108|chr16 (141 aa)
initn: 254 init1: 220 opt: 281 Z-score: 392.0 bits: 78.5 E(32554): 1.6e-15
Smith-Waterman score: 281; 35.9% identity (69.0% similar) in 145 aa overlap (4-146:2-140)
10 20 30 40 50
pF1KE5 MVHLTPEEKSAVTALWGKVNVDEV--GGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGN
:. .:.. .. .: . :. :.: : ::..::: :. .: .. . ::.
CCDS32 MLSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLS--ACQDAT---
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 PKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHH
.. .::...:.: . .. :.:::..... :..:: :.::: :: :: . . ::: :
CCDS32 -QLLSHGQRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASH
60 70 80 90 100 110
120 130 140
pF1KE5 FGKEFTPPVQAAYQKVVAGVANALAHKYH
. ::: .:::..: ..::: .:..::
CCDS32 LQDEFTVQMQAAWDKFLTGVAVVLTEKYR
120 130 140
147 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 21:05:38 2016 done: Mon Nov 7 21:05:38 2016
Total Scan time: 1.240 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]