FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5101, 95 aa
  1>>>pF1KE5101 95 - 95 aa - 95 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.2959+/-0.00053; mu= 13.9436+/- 0.032
 mean_var=47.4115+/- 9.378, 0's: 0 Z-trim(111.6): 16  B-trim: 6 in 1/49
 Lambda= 0.186266
 statistics sampled from 12483 (12498) to 12483 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.384), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(32554)
CCDS8387.1 FXYD6 gene_id:53826|Hs108|chr11         (  95)  615 171.6 6.4e-44
CCDS73400.1 FXYD2 gene_id:100533181|Hs108|chr11    ( 144)  463 130.9 1.8e-31
CCDS58184.1 FXYD2 gene_id:100533181|Hs108|chr11    ( 112)  361 103.4 2.6e-23
CCDS12445.1 FXYD1 gene_id:5348|Hs108|chr19         (  92)  258 75.7 4.7e-15


>>CCDS8387.1 FXYD6 gene_id:53826|Hs108|chr11              (95 aa)
 initn: 615 init1: 615 opt: 615  Z-score: 902.0  bits: 171.6 E(32554): 6.4e-44
Smith-Waterman score: 615; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95)

               10        20        30        40        50        60
pF1KE5 MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
               10        20        30        40        50        60

               70        80        90     
pF1KE5 CKCSFNQKPRAPGDEEAQVENLITANATEPQKAEN
       :::::::::::::::::::::::::::::::::::
CCDS83 CKCSFNQKPRAPGDEEAQVENLITANATEPQKAEN
               70        80        90     

>>CCDS73400.1 FXYD2 gene_id:100533181|Hs108|chr11         (144 aa)
 initn: 641 init1: 458 opt: 463  Z-score: 678.6  bits: 130.9 E(32554): 1.8e-31
Smith-Waterman score: 463; 85.9% identity (91.8% similar) in 85 aa overlap (1-83:1-85)

               10        20        30        40        50        60
pF1KE5 MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILSRR
               10        20        30        40        50        60

               70          80        90                            
pF1KE5 CKCSFNQKPR--APGDEEAQVENLITANATEPQKAEN                       
       ::::::::::  :: ..: .  . .                                   
CCDS73 CKCSFNQKPRNRAPESRELKCSHQVEGGSPKGDVDPFYYDYETVRNGGLIFAGLAFIVGL
               70        80        90       100       110       120

>>CCDS58184.1 FXYD2 gene_id:100533181|Hs108|chr11         (112 aa)
 initn: 367 init1: 357 opt: 361  Z-score: 532.1  bits: 103.4 E(32554): 2.6e-23
Smith-Waterman score: 361; 65.3% identity (78.9% similar) in 95 aa overlap (1-91:1-95)

               10        20        30        40        50          
pF1KE5 MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILS--
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS58 MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLILRPQ
               10        20        30        40        50        60

         60        70        80        90                  
pF1KE5 --RRCKCSFNQKPRAPGDEEAQVENLITANATEPQKAEN             
         :. .   .. :   . .. ..:   ...  .::                 
CCDS58 EMRKPRWRTSSPPMQQSPRKQRTEVQPSGGRRQPQGGRGPVLLWQKIPLWGQ
               70        80        90       100       110  

>>CCDS12445.1 FXYD1 gene_id:5348|Hs108|chr19              (92 aa)
 initn: 318 init1: 238 opt: 258  Z-score: 383.7  bits: 75.7 E(32554): 4.7e-15
Smith-Waterman score: 258; 51.2% identity (75.6% similar) in 82 aa overlap (4-83:7-84)

                  10        20        30        40        50       
pF1KE5    MELVLVFLCSLLAPMVLASAAEKEKEMDPFHYDYQTLRIGGLVFAVVLFSVGILLIL
             .:::  .::.     . ::. :: ::: ::::.:.:::::.: .:: .:::..:
CCDS12 MASLGHILVFCVGLLT----MAKAESPKEHDPFTYDYQSLQIGGLVIAGILFILGILIVL
               10            20        30        40        50      

        60        70          80        90     
pF1KE5 SRRCKCSFNQKPRA--PGDEEAQVENLITANATEPQKAEN
       ::::.:.:::. :.  : .::.  .. :            
CCDS12 SRRCRCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR    
         60        70        80        90      




95 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:05:04 2016 done: Mon Nov  7 21:05:05 2016
 Total Scan time:  1.500 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]