FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5086, 79 aa
  1>>>pF1KE5086 79 - 79 aa - 79 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3870+/-0.000244; mu= 12.3074+/- 0.015
 mean_var=50.6233+/-10.071, 0's: 0 Z-trim(121.5): 2  B-trim: 402 in 1/53
 Lambda= 0.180260
 statistics sampled from 38084 (38086) to 38084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.846), E-opt: 0.2 (0.447), width:  16
 Scan time:  4.080

The best scores are:                                      opt bits E(85289)
NP_150284 (OMIM: 608721) calcium/calmodulin-depend (  79)  538 146.3 4.7e-36
NP_061054 (OMIM: 614986) calcium/calmodulin-depend (  78)  352 98.0 1.7e-21


>>NP_150284 (OMIM: 608721) calcium/calmodulin-dependent   (79 aa)
 initn: 538 init1: 538 opt: 538  Z-score: 768.2  bits: 146.3 E(85289): 4.7e-36
Smith-Waterman score: 538; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KE5 MSEILPYSEDKMGRFGADPEGSDLSFSCRLQDTNSFFAGNQAKRPPKLGQIGRAKRVVIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_150 MSEILPYSEDKMGRFGADPEGSDLSFSCRLQDTNSFFAGNQAKRPPKLGQIGRAKRVVIE
               10        20        30        40        50        60

               70         
pF1KE5 DDRIDDVLKGMGEKPPSGV
       :::::::::::::::::::
NP_150 DDRIDDVLKGMGEKPPSGV
               70         

>>NP_061054 (OMIM: 614986) calcium/calmodulin-dependent   (78 aa)
 initn: 296 init1: 296 opt: 352  Z-score: 506.9  bits: 98.0 E(85289): 1.7e-21
Smith-Waterman score: 352; 65.4% identity (87.7% similar) in 81 aa overlap (1-79:1-78)

               10        20          30        40        50        
pF1KE5 MSEILPYSEDKMGRFGADPEGSDLS--FSCRLQDTNSFFAGNQAKRPPKLGQIGRAKRVV
       :::.:::...:.. .:   .:.:..  :::::::::.::...: :::::::::::.::::
NP_061 MSEVLPYGDEKLSPYG---DGGDVGQIFSCRLQDTNNFFGAGQNKRPPKLGQIGRSKRVV
               10           20        30        40        50       

       60        70         
pF1KE5 IEDDRIDDVLKGMGEKPPSGV
       :::::::::::.: .: : ::
NP_061 IEDDRIDDVLKNMTDKAPPGV
        60        70        




79 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:53:35 2016 done: Tue Nov  8 04:53:36 2016
 Total Scan time:  4.080 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]