Result of FASTA (ccds) for
pFN21AE5083
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5083, 977 aa
1>>>pF1KE5083 977 - 977 aa - 977 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2105+/-0.000949; mu= 6.3794+/- 0.058
mean_var=280.8950+/-57.900, 0's: 0 Z-trim(114.4): 33 B-trim: 0 in 0/52
Lambda= 0.076525
statistics sampled from 14981 (15002) to 14981 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.461), width: 16
Scan time: 4.240
The best scores are: opt bits E(32554)
CCDS822.1 RBM15 gene_id:64783|Hs108|chr1 ( 977) 6559 738.2 1.8e-212
CCDS59198.1 RBM15 gene_id:64783|Hs108|chr1 ( 969) 6412 722.0 1.4e-207
CCDS33764.1 RBM15B gene_id:29890|Hs108|chr3 ( 890) 1438 172.8 2.7e-42
>>CCDS822.1 RBM15 gene_id:64783|Hs108|chr1 (977 aa)
initn: 6559 init1: 6559 opt: 6559 Z-score: 3927.9 bits: 738.2 E(32554): 1.8e-212
Smith-Waterman score: 6559; 100.0% identity (100.0% similar) in 977 aa overlap (1-977:1-977)
10 20 30 40 50 60
pF1KE5 MRTAGRDPVPRRSPRWRRAVPLCETSAGRRVTQLRGDDLRRPATMKGKERSPVKAKRSRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MRTAGRDPVPRRSPRWRRAVPLCETSAGRRVTQLRGDDLRRPATMKGKERSPVKAKRSRG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GEDSTSRGERSKKLGGSGGSNGSSSGKTDSGGGSRRSLHLDKSSSRGGSREYDTGGGSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GEDSTSRGERSKKLGGSGGSNGSSSGKTDSGGGSRRSLHLDKSSSRGGSREYDTGGGSSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 SRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGGDGAEYKTLKISELGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGGDGAEYKTLKISELGSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 LSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 YDRPLKIEAVYVSRRRSRSPLDKDTYPPSASVVGASVGGHRHPPGGGGGQRSLSPGGAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YDRPLKIEAVYVSRRRSRSPLDKDTYPPSASVVGASVGGHRHPPGGGGGQRSLSPGGAAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 GYRDYRLQQLALGRLPPPPPPPLPRDLERERDYPFYERVRPAYSLEPRVGAGAGAAPFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GYRDYRLQQLALGRLPPPPPPPLPRDLERERDYPFYERVRPAYSLEPRVGAGAGAAPFRE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 VDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 FENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 IRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE5 LPLTHYELVTDAFGHRAPDPLRGARDRTPPLLYRDRDRDLYPDSDWVPPPPPVRERSTRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LPLTHYELVTDAFGHRAPDPLRGARDRTPPLLYRDRDRDLYPDSDWVPPPPPVRERSTRT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE5 AATSVPAYEPLDSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AATSVPAYEPLDSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE5 RPRKRHCAPSPDRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RPRKRHCAPSPDRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE5 NSASAERDRKHRTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NSASAERDRKHRTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE5 SPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE5 KLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE5 AGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGFGFQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGFGFQI
910 920 930 940 950 960
970
pF1KE5 GVRYENKKRENLALTLL
:::::::::::::::::
CCDS82 GVRYENKKRENLALTLL
970
>>CCDS59198.1 RBM15 gene_id:64783|Hs108|chr1 (969 aa)
initn: 6412 init1: 6412 opt: 6412 Z-score: 3840.2 bits: 722.0 E(32554): 1.4e-207
Smith-Waterman score: 6412; 100.0% identity (100.0% similar) in 954 aa overlap (1-954:1-954)
10 20 30 40 50 60
pF1KE5 MRTAGRDPVPRRSPRWRRAVPLCETSAGRRVTQLRGDDLRRPATMKGKERSPVKAKRSRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MRTAGRDPVPRRSPRWRRAVPLCETSAGRRVTQLRGDDLRRPATMKGKERSPVKAKRSRG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GEDSTSRGERSKKLGGSGGSNGSSSGKTDSGGGSRRSLHLDKSSSRGGSREYDTGGGSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GEDSTSRGERSKKLGGSGGSNGSSSGKTDSGGGSRRSLHLDKSSSRGGSREYDTGGGSSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 SRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGGDGAEYKTLKISELGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SRLHSYSSPSTKNSSGGGESRSSSRGGGGESRSSGAASSAPGGGDGAEYKTLKISELGSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 LSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LSDEAVEDGLFHEFKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAKHARGRLVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 YDRPLKIEAVYVSRRRSRSPLDKDTYPPSASVVGASVGGHRHPPGGGGGQRSLSPGGAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 YDRPLKIEAVYVSRRRSRSPLDKDTYPPSASVVGASVGGHRHPPGGGGGQRSLSPGGAAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 GYRDYRLQQLALGRLPPPPPPPLPRDLERERDYPFYERVRPAYSLEPRVGAGAGAAPFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GYRDYRLQQLALGRLPPPPPPPLPRDLERERDYPFYERVRPAYSLEPRVGAGAGAAPFRE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 VDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 FENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 IRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IRTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE5 LPLTHYELVTDAFGHRAPDPLRGARDRTPPLLYRDRDRDLYPDSDWVPPPPPVRERSTRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LPLTHYELVTDAFGHRAPDPLRGARDRTPPLLYRDRDRDLYPDSDWVPPPPPVRERSTRT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE5 AATSVPAYEPLDSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AATSVPAYEPLDSLDRRRDGWSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDRSPESD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE5 RPRKRHCAPSPDRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RPRKRHCAPSPDRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGDKRDRK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE5 NSASAERDRKHRTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NSASAERDRKHRTTAPTEGKSPLKKEDRSDGSAPSTSTASSKLKSPSQKQDGGTAPVASA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE5 SPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLKITQRLRLDQP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE5 KLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRNLVSYLKQKQA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE5 AGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRGFGFQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVMIIVRAKLVEQ
910 920 930 940 950 960
970
pF1KE5 GVRYENKKRENLALTLL
CCDS59 RMKIWNSKL
>>CCDS33764.1 RBM15B gene_id:29890|Hs108|chr3 (890 aa)
initn: 1852 init1: 892 opt: 1438 Z-score: 872.9 bits: 172.8 E(32554): 2.7e-42
Smith-Waterman score: 2147; 45.8% identity (66.4% similar) in 934 aa overlap (59-954:14-887)
30 40 50 60 70 80
pF1KE5 RRVTQLRGDDLRRPATMKGKERSPVKAKRSRGGEDSTSRG---ERSKKLGGSGGSNGSSS
::. .:..: :: . :: ... .:.
CCDS33 MKRQSERDSSPSGRGSSSSAKRPREREREAEAGGRRAAHKASG
10 20 30 40
90 100 110 120 130 140
pF1KE5 GKTDSGGGSRRSLHLDKSSSRGGSREYDTGGGSSSSRLHSYSSPSTKNSSGG-GESRSSS
: . :. ..:. :: :. : :... : : : .. ..:: : . :..
CCDS33 GAKHPVPARARDKPRGSGSGGGGHRD-GRGTGDANHRASSGRSSGSGAGGGGRGGKASGD
50 60 70 80 90 100
150 160 170 180 190
pF1KE5 RGGGGES-RSS---------GAASSAPGGGDGA-EYKTLKISELGSQLSDEAVEDGLFHE
:..: : :.: :: . ::.. .: ::::: :: :. : : .:: :::.
CCDS33 PGASGMSPRASPLPPPPPPPGAEPACPGSSAAAPEYKTLLISSLSPALPAEHLEDRLFHQ
110 120 130 140 150 160
200 210 220 230 240 250
pF1KE5 FKRFGDVSVKISHLSGSGSGDERVAFVNFRRPEDARAAK-HARGR-LVLYDRPLKIEAVY
:::::..:...:: : :::.::::.:.::: :. :: .: :.:::::::.: ::
CCDS33 FKRFGEISLRLSHTPELG----RVAYVNFRHPQDAREARQHALARQLLLYDRPLKVEPVY
170 180 190 200 210
260 270 280 290 300
pF1KE5 V------SRRRSRSPLDKDTYPPSASVVGASVGGHRHPPGGGG---GQRSLSPGGAALGY
. ::: : : .: ::. . . .: . : :: :::::: ::
CCDS33 LRGGGGSSRRSSSSSAAASTPPPGPPAPADPLG---YLPLHGGYQYKQRSLSPV-AAPPL
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE5 RDYRLQQLALG-RLPPPPPPPLPRDLERERDYPFYERVRPAYSLEPRVGAGAGAAPFREV
:. : .. : . : . . :: :: :.: : : :
CCDS33 REPRARHAAAAFALDAAAAAAVGLSRERALDY---------YGLYDDRGRPYGYPAVCEE
280 290 300 310 320
370 380 390 400 410 420
pF1KE5 DEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKF
: . :::::::.:.::.:::: .:.: .:::::...:.: :: ::::.::: ..:.::::
CCDS33 D-LMPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKF
330 340 350 360 370 380
430 440 450 460 470 480
pF1KE5 ENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTTRLWVGGLGPWVPLAALAREFDRFGTI
.::::.::::.::::..: :::::::::::.:::::::::::: . ::::::::::::.:
CCDS33 QNLDMAHRAKVAMSGRVIGRNPIKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSI
390 400 410 420 430 440
490 500 510 520 530 540
pF1KE5 RTIDYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEH-RYQQQYLQP
::::. ::::.:::::::::::.:: ..:::::::::::::::::: .:. :: ::: ::
CCDS33 RTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQQY-QP
450 460 470 480 490 500
550 560 570 580 590
pF1KE5 LPL-THYELVTDAFG-HRAPDPLRGARDRTPP-LLYRDRDRDLYPDSDWVPPPPPVRERS
:: .::::.::.. :: : .:::::: ::: :::: . ..::. : .:.
CCDS33 SPLPVHYELLTDGYTRHRNLDA-DLVRDRTPPHLLYSDRDRTFL-EGDWTSPSKSSDRRN
510 520 530 540 550 560
600 610 620 630 640 650
pF1KE5 TRTAATSVPAYEPLDSLDRRRDG--WSLDRDRGDRDLPSSRDQPRKRRLPEESGGRHLDR
:. .: :. : :.: :. : ::: ::. .. ::::
CCDS33 ------SLEGYS--RSV-RSRSGERWGAD---GDRGLPKPWEERRKRR------------
570 580 590
660 670 680 690 700 710
pF1KE5 SPESDRPRKRHCAPSPDRSPELSSSRDRYNSDNDRSSRLLLERPSPIRDRRGSLEKSQGD
: ::: : : .: .:: . ..: .. . .::. : :.:. . ..:.:
CCDS33 SLSSDRGRTTH-SPYEERS-RTKGSGQQSERGSDRT---------PERSRKEN-HSSEGT
600 610 620 630 640
720 730 740 750 760 770
pF1KE5 KRDRKNSASAER----DRKHRTTAPTEGKSPLKKEDRSDGSAPSTSTASSK-LKSPSQKQ
:.. .:: : : .: :. . : :. :.. :. : : :. : ...
CCDS33 KESSSNSLSNSRHGAEERGHHHHHHEAADSSHGKKARDSERNHRTTEAEPKPLEEP-KHE
650 660 670 680 690 700
780 790 800 810 820 830
pF1KE5 DGGTAPVASASPKLCLAWQGMLLLKNSNFPSNMHLLQGDLQVASSLLVEGSTGGKVAQLK
.. . : :.:.:.:.:::: ::..::.:.:: : :::: . ..:.:..:::
CCDS33 TKKLKNLSEYAQTLQLGWNGLLVLKNSCFPTSMHILEGDQGVISSLLKDHTSGSKLTQLK
710 720 730 740 750 760
840 850 860 870 880 890
pF1KE5 ITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSSSAASDTATSTQRPLRN
:.:::::::::::::::::: ..:::::.:::. .. .. .. . . . . . .: :::
CCDS33 IAQRLRLDQPKLDEVTRRIKQGSPNGYAVLLATQATPSGLGTEGMPTVEPGLQ-RRLLRN
770 780 790 800 810 820
900 910 920 930 940 950
pF1KE5 LVSYLKQKQAAGVISLPVGGNKDKENTGVLHAFPPCEFSQQFLDSPAKALAKSEEDYLVM
::::::::::::::::::::.: ...::.:.:::::.::::.:.: ..:.: ::...:.
CCDS33 LVSYLKQKQAAGVISLPVGGSKGRDGTGMLYAFPPCDFSQQYLQSALRTLGKLEEEHMVI
830 840 850 860 870 880
960 970
pF1KE5 IIVRGFGFQIGVRYENKKRENLALTLL
.:::
CCDS33 VIVRDTA
890
977 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:51:53 2016 done: Tue Nov 8 04:51:54 2016
Total Scan time: 4.240 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]