FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5077, 199 aa
  1>>>pF1KE5077 199 - 199 aa - 199 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4391+/-0.000731; mu= 2.8559+/- 0.044
 mean_var=222.3692+/-44.691, 0's: 0 Z-trim(118.0): 2  B-trim: 197 in 1/54
 Lambda= 0.086008
 statistics sampled from 18817 (18819) to 18817 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.578), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS10274.1 RPP25 gene_id:54913|Hs108|chr15        ( 199) 1337 176.9 7.2e-45
CCDS6559.1 RPP25L gene_id:138716|Hs108|chr9        ( 163)  425 63.7 7.3e-11


>>CCDS10274.1 RPP25 gene_id:54913|Hs108|chr15             (199 aa)
 initn: 1337 init1: 1337 opt: 1337  Z-score: 919.0  bits: 176.9 E(32554): 7.2e-45
Smith-Waterman score: 1337; 99.5% identity (99.5% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KE5 MENFRKVRSEEAPAGCGAEGGGPGSGPFADLAPGAVHMRVKEGSKIRNLMAFATASMAQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MENFRKVRSEEAPAGCGAEGGGPGSGPFADLAPGAVHMRVKEGSKIRNLMAFATASMAQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGSTQGQTPG
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS10 ATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTQGQTPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 EPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGE
              130       140       150       160       170       180

              190         
pF1KE5 GSAKRSQPEPGVADEDQTA
       :::::::::::::::::::
CCDS10 GSAKRSQPEPGVADEDQTA
              190         

>>CCDS6559.1 RPP25L gene_id:138716|Hs108|chr9             (163 aa)
 initn: 428 init1: 255 opt: 425  Z-score: 308.5  bits: 63.7 E(32554): 7.3e-11
Smith-Waterman score: 435; 42.4% identity (69.2% similar) in 172 aa overlap (1-172:1-154)

               10        20        30        40        50        60
pF1KE5 MENFRKVRSEEAPAGCGAEGGGPGSGPFADLAPGAVHMRVKEGSKIRNLMAFATASMAQP
       ::..::. : : ::        :.  :. .: : ...:::..:::::::...: . .   
CCDS65 MEHYRKAGSVELPA--------PS--PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGG
               10                  20        30        40        50

               70        80        90       100       110       120
pF1KE5 ATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGSTQGQTPG
       ..: .:::: :::. :.:.::::.:::. ::::.:.::. .... :  .: .   :  : 
CCDS65 SARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSW--VPASPDTGLDP-
               60        70        80        90         100        

              130       140       150       160       170       180
pF1KE5 EPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGE
            :.: ..::.. .:::.: ::: . :::::.  :: .: :..  . ::        
CCDS65 -----LTVRRHVPAVWVLLSRDPLDPNECGYQPPGAPPGLGSMPSSSCGPRSRRRARDTR
            110       120       130       140       150       160  

              190         
pF1KE5 GSAKRSQPEPGVADEDQTA
                          
CCDS65 S                  
                          




199 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:43:10 2016 done: Tue Nov  8 03:43:10 2016
 Total Scan time:  2.560 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]