FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5072, 150 aa
  1>>>pF1KE5072 150 - 150 aa - 150 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0930+/-0.00058; mu= 13.5732+/- 0.035
 mean_var=75.8584+/-14.532, 0's: 0 Z-trim(114.4): 75  B-trim: 170 in 1/49
 Lambda= 0.147256
 statistics sampled from 14839 (14938) to 14839 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.459), width:  16
 Scan time:  1.580

The best scores are:                                      opt bits E(32554)
CCDS1187.1 DUSP23 gene_id:54935|Hs108|chr1         ( 150) 1039 228.8 9.5e-61


>>CCDS1187.1 DUSP23 gene_id:54935|Hs108|chr1              (150 aa)
 initn: 1039 init1: 1039 opt: 1039  Z-score: 1204.1  bits: 228.8 E(32554): 9.5e-61
Smith-Waterman score: 1039; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KE5 MGVQPPNFSWVLPGRLAGLALPRLPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGVQPPNFSWVLPGRLAGLALPRLPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLVKERGLAAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLVKERGLAAGD
               70        80        90       100       110       120

              130       140       150
pF1KE5 AIAEIRRLRPGSIETYEQEKAVFQFYQRTK
       ::::::::::::::::::::::::::::::
CCDS11 AIAEIRRLRPGSIETYEQEKAVFQFYQRTK
              130       140       150




150 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:46:08 2016 done: Tue Nov  8 04:46:09 2016
 Total Scan time:  1.580 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]