FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5070, 93 aa
  1>>>pF1KE5070 93 - 93 aa - 93 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3527+/-0.000486; mu= 10.1517+/- 0.030
 mean_var=77.8246+/-15.226, 0's: 0 Z-trim(116.6): 3  B-trim: 0 in 0/54
 Lambda= 0.145384
 statistics sampled from 17212 (17214) to 17212 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.529), width:  16
 Scan time:  1.440

The best scores are:                                      opt bits E(32554)
CCDS10236.1 LARP6 gene_id:55323|Hs108|chr15        (  93)  603 134.1 1.2e-32
CCDS32281.1 LARP6 gene_id:55323|Hs108|chr15        ( 491)  444 101.3 4.9e-22


>>CCDS10236.1 LARP6 gene_id:55323|Hs108|chr15             (93 aa)
 initn: 603 init1: 603 opt: 603  Z-score: 699.5  bits: 134.1 E(32554): 1.2e-32
Smith-Waterman score: 603; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93)

               10        20        30        40        50        60
pF1KE5 MAQSGGEARPGPKTAVQIRVAIQEAEDVDELEDEEEGAETRGAGDPARYLSPGWGSASEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAQSGGEARPGPKTAVQIRVAIQEAEDVDELEDEEEGAETRGAGDPARYLSPGWGSASEE
               10        20        30        40        50        60

               70        80        90   
pF1KE5 EPSRGHRNRSSVNSRTMLASFIVSSAPSTAPST
       :::::::::::::::::::::::::::::::::
CCDS10 EPSRGHRNRSSVNSRTMLASFIVSSAPSTAPST
               70        80        90   

>>CCDS32281.1 LARP6 gene_id:55323|Hs108|chr15             (491 aa)
 initn: 444 init1: 444 opt: 444  Z-score: 509.2  bits: 101.3 E(32554): 4.9e-22
Smith-Waterman score: 444; 93.0% identity (97.2% similar) in 71 aa overlap (1-71:1-71)

               10        20        30        40        50        60
pF1KE5 MAQSGGEARPGPKTAVQIRVAIQEAEDVDELEDEEEGAETRGAGDPARYLSPGWGSASEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAQSGGEARPGPKTAVQIRVAIQEAEDVDELEDEEEGAETRGAGDPARYLSPGWGSASEE
               10        20        30        40        50        60

               70        80        90                              
pF1KE5 EPSRGHRNRSSVNSRTMLASFIVSSAPSTAPST                           
       :::::: . ..                                                 
CCDS32 EPSRGHSGTTASGGENEREDLEQEWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVR
               70        80        90       100       110       120




93 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:45:13 2016 done: Tue Nov  8 04:45:13 2016
 Total Scan time:  1.440 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]