Result of FASTA (omim) for
pFN21AE5060
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5060, 393 aa
1>>>pF1KE5060 393 - 393 aa - 393 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3222+/-0.000374; mu= 16.8275+/- 0.023
mean_var=68.0249+/-13.423, 0's: 0 Z-trim(112.1): 14 B-trim: 0 in 0/51
Lambda= 0.155504
statistics sampled from 20947 (20951) to 20947 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.246), width: 16
Scan time: 6.670
The best scores are: opt bits E(85289)
NP_001096062 (OMIM: 612178) small RNA 2'-O-methylt ( 393) 2651 603.9 2.1e-172
NP_653185 (OMIM: 612178) small RNA 2'-O-methyltran ( 393) 2651 603.9 2.1e-172
XP_005270468 (OMIM: 612178) PREDICTED: small RNA 2 ( 401) 2608 594.3 1.7e-169
XP_016855668 (OMIM: 612178) PREDICTED: small RNA 2 ( 237) 1599 367.8 1.5e-101
>>NP_001096062 (OMIM: 612178) small RNA 2'-O-methyltrans (393 aa)
initn: 2651 init1: 2651 opt: 2651 Z-score: 3216.2 bits: 603.9 E(85289): 2.1e-172
Smith-Waterman score: 2651; 99.7% identity (100.0% similar) in 393 aa overlap (1-393:1-393)
10 20 30 40 50 60
pF1KE5 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE
310 320 330 340 350 360
370 380 390
pF1KE5 IMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF
.::::::::::::::::::::::::::::::::
NP_001 MMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF
370 380 390
>>NP_653185 (OMIM: 612178) small RNA 2'-O-methyltransfer (393 aa)
initn: 2651 init1: 2651 opt: 2651 Z-score: 3216.2 bits: 603.9 E(85289): 2.1e-172
Smith-Waterman score: 2651; 99.7% identity (100.0% similar) in 393 aa overlap (1-393:1-393)
10 20 30 40 50 60
pF1KE5 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 LLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYHGSVVERDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 RLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 HKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 LSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 PKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEE
310 320 330 340 350 360
370 380 390
pF1KE5 IMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF
.::::::::::::::::::::::::::::::::
NP_653 MMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF
370 380 390
>>XP_005270468 (OMIM: 612178) PREDICTED: small RNA 2'-O- (401 aa)
initn: 2607 init1: 2607 opt: 2608 Z-score: 3164.0 bits: 594.3 E(85289): 1.7e-169
Smith-Waterman score: 2608; 98.7% identity (99.5% similar) in 391 aa overlap (3-393:11-401)
10 20 30 40 50
pF1KE5 MEENNLQCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVA
: ..:::::::::::::::::::::::::::::::::::::::::::::
XP_005 MMEATARTKTEALVSCSSVVDGNFEEVPRETAIQFKPPLYRQRYQFVKNLVDQHEPKKVA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 DLGCGDTSLLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLGCGDTSLLRLLKVNPCIELLVGVDINEDKLRWRGDSLAPFLGDFLKPRDLNLTITLYH
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 GSVVERDSRLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSVVERDSRLLGFDLITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 SVTLRDSDHKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SVTLRDSDHKFEWTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKN
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 GGKATESCLSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGKATESCLSEQHDQHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKE
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 QAGERGDKPKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QAGERGDKPKDIGGSKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKL
310 320 330 340 350 360
360 370 380 390
pF1KE5 NRLCANEEIMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF
::::::::.::::::::::::::::::::::::::::::::
XP_005 NRLCANEEMMRSVIADSIPLSSDGSAVVADLRNYFDEQFEF
370 380 390 400
>>XP_016855668 (OMIM: 612178) PREDICTED: small RNA 2'-O- (237 aa)
initn: 1599 init1: 1599 opt: 1599 Z-score: 1944.0 bits: 367.8 E(85289): 1.5e-101
Smith-Waterman score: 1599; 99.6% identity (100.0% similar) in 237 aa overlap (157-393:1-237)
130 140 150 160 170 180
pF1KE5 LITCIELIEHLDSGDLARFPEVVFGYLSPSMIVISTPNSEFNPLFPSVTLRDSDHKFEWT
::::::::::::::::::::::::::::::
XP_016 MIVISTPNSEFNPLFPSVTLRDSDHKFEWT
10 20 30
190 200 210 220 230 240
pF1KE5 RMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESCLSEQHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESCLSEQHD
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE5 QHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDKPKDIGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QHVYKAVFTTSYPSLQQERFFKLVLVNEVSQQVESLRVSHLPRRKEQAGERGDKPKDIGG
100 110 120 130 140 150
310 320 330 340 350 360
pF1KE5 SKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEEIMRSVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
XP_016 SKAPVPCFGPVFTEVEKAKIENSPTPFCVGDKFFVPLQRLLAYPKLNRLCANEEMMRSVI
160 170 180 190 200 210
370 380 390
pF1KE5 ADSIPLSSDGSAVVADLRNYFDEQFEF
:::::::::::::::::::::::::::
XP_016 ADSIPLSSDGSAVVADLRNYFDEQFEF
220 230
393 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:38:32 2016 done: Tue Nov 8 04:38:33 2016
Total Scan time: 6.670 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]